I am trying to automatically register some volumes together but when I looked at the modules listed for the nightly build online, none of them show an automated registration module, yet the FAQ on Registration site hints that there are automated methods out there. The modules I have all seem to be s…

All intensity-based registration methods in Slicer are fully automatic. I like SlicerElastix (in SlicerElastix extension) the most, because it is very robust and usually does not require any parameter tuning. BRAINS is just a brand name. It contains a number of general registration methods, basica…

I have volumes that I have segmented. I then registered them, is there a way to transfer the segmentations to the new registered volume matrices?

Yes. Apply the same transform to the segmentation node that was used to transform the volume.

Is there a method by which to use the Elastix registration module to batch process multiple volume registrations? With regards to this, when registering 2 volumes, the fixed volume does not appear to be zero-padded if the registration transformation ends up pulling the volume image outside of the di…

What I mean by this is that I am essentially trying to register multiple images to each other at the same time so that if image A is smaller than image C, but not B, then A is zero-padded and image B is re-registered after image C automatically so that in the end all images have the same dimensions? …

You can have a look at how Sequence registration extension is implemented. It registers a sequence of images to each other.

How would I go about converting a series of cropped volumes into a sequence without exporting all the volumes to dicom files and reloading them in? Also, according to the documentation for this extension, you are still registering the sequence to a single volume. Is that going to allow that volume t…

So I figured out how to create a sequence, but I don’t know how to visualize it to determine if the registration has worked or not, or how to split that sequence apart again as the sequences module only has add or delete options for the sequences. I’ve tried the sequence browser but it doesn’t visua…

[image] stevenagl12: Also, according to the documentation for this extension, you are still registering the sequence to a single volume. Is that going to allow that volume to be changed as well as the 4D sequence of dicoms? Yes. [image] stevenagl12: this method of registration uses 4D da…

Automated registration in the Nightly Build

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Topic		Replies	Views
How to do batch registration? Support registration	10	3238	July 12, 2022
Automatic segmentation of sequences in time Support registration , transforms , sequences , 4d	18	1460	November 24, 2021
Segmentation of 4D sequence volumes using Sequence Registration Support registration , segmentation , sequences	5	1208	November 10, 2025
Registration of 4D Volume Support	1	75	August 14, 2024
Expert automated registration Support	19	2109	July 9, 2021

Automated registration in the Nightly Build

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