# Community

**URL:** https://discourse.slicer.org/c/community/12.md?no_subcategories=false&page=45

[Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md)

**Page:** 46

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## [2018.08.28 Hangout](https://discourse.slicer.org/t/2018-08-28-hangout/3925)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 2\
**Last updated:** [August 28, 2018, 2:53pm UTC](https://discourse.slicer.org/t/2018-08-28-hangout/3925 "2018-08-28T14:53:39Z")

</div>

Hi, As usual, we will be having our weekly hangout at 10am EST. Since we don’t have a specific agenda, I anticipate it will be short. Anyone is welcome to join to ask questions at https://bit.ly/slicer-googlemeet-host…

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## [Spinal cord not being masked out](https://discourse.slicer.org/t/spinal-cord-not-being-masked-out/3884)

<div class="topic-metadata">

**Author:** [@Saba\_Shahab](https://discourse.slicer.org/u/Saba_Shahab)\
**Replies:** 10\
**Last updated:** [August 27, 2018, 6:02pm UTC](https://discourse.slicer.org/t/spinal-cord-not-being-masked-out/3884 "2018-08-27T18:02:01Z")

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Operating system: NAME=“Ubuntu” VERSION=“16.04.3 LTS (Xenial Xerus)” ID=ubuntu ID\_LIKE=debian PRETTY\_NAME=“Ubuntu 16.04.3 LTS” VERSION\_ID=“16.04” Slicer version: Slicer nightly (updated as of 2018-08-20) For a s…

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## [2018.08.21 Hangout](https://discourse.slicer.org/t/2018-08-21-hangout/3857)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [August 21, 2018, 1:55pm UTC](https://discourse.slicer.org/t/2018-08-21-hangout/3857 "2018-08-21T13:55:25Z")

</div>

Hi, As usual, we will be having our weekly hangout at 10am EST. Since we don’t have a specific agenda, I anticipate it will be short. Anyone is welcome to join to ask questions at https://bit.ly/slicer-googlemeet-host…

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## [2018-08-21 Hangout](https://discourse.slicer.org/t/2018-08-21-hangout/3856)

<div class="topic-metadata">

**Author:** [@pieper](https://discourse.slicer.org/u/pieper)\
**Replies:** 0\
**Last updated:** [August 21, 2018, 1:15pm UTC](https://discourse.slicer.org/t/2018-08-21-hangout/3856 "2018-08-21T13:15:06Z")

</div>

I can be on for a bit today if anyone wants - or I’m also fine if we skip and work on other things.

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## [2018.08.14 Hangout](https://discourse.slicer.org/t/2018-08-14-hangout/3773)

<div class="topic-metadata">

**Author:** [@Candace\_Moore](https://discourse.slicer.org/u/Candace_Moore)\
**Replies:** 3\
**Last updated:** [August 14, 2018, 3:06pm UTC](https://discourse.slicer.org/t/2018-08-14-hangout/3773 "2018-08-14T15:06:12Z")

</div>

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## [Weekly Hangout for Slicer user and developer](https://discourse.slicer.org/t/weekly-hangout-for-slicer-user-and-developer/53)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 6\
**Last updated:** [August 30, 2017, 9:53pm UTC](https://discourse.slicer.org/t/weekly-hangout-for-slicer-user-and-developer/53 "2017-08-30T21:53:03Z")

</div>

You will find here announcement for our weekly hangout.

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## [Industry Standard Image Set for Radiomics Programs](https://discourse.slicer.org/t/industry-standard-image-set-for-radiomics-programs/3662)

<div class="topic-metadata">

**Author:** [@Candace\_Moore](https://discourse.slicer.org/u/Candace_Moore)\
**Replies:** 13\
**Last updated:** [August 11, 2018, 12:36pm UTC](https://discourse.slicer.org/t/industry-standard-image-set-for-radiomics-programs/3662 "2018-08-11T12:36:58Z")

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I’ve developed some programming for texture analysis. Is there a standard image set I can test these on?

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## [2018.08.07 Hangout](https://discourse.slicer.org/t/2018-08-07-hangout/3681)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [August 7, 2018, 1:52pm UTC](https://discourse.slicer.org/t/2018-08-07-hangout/3681 "2018-08-07T13:52:49Z")

</div>

Hi, As usual, we will be having our weekly hangout at 10am EST. Since we don’t have a specific agenda, I anticipate it will be short. Anyone is welcome to join to ask questions at https://bit.ly/slicer-googlemeet-host…

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## [2018.07.31 Hangout](https://discourse.slicer.org/t/2018-07-31-hangout/3567)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [July 24, 2018, 2:03pm UTC](https://discourse.slicer.org/t/2018-07-31-hangout/3567 "2018-07-24T14:03:33Z")

</div>

After attending both the projects in Gran Canaria and the one in Canada including overall close to 100 attendees, we will be back to our regular hangout schedule. The plan is to have our hangout on July 31 at 10am. Nex…

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## [Big thank you to the community!](https://discourse.slicer.org/t/big-thank-you-to-the-community/3486)

<div class="topic-metadata">

**Author:** [@Lea\_Anthony](https://discourse.slicer.org/u/Lea_Anthony)\
**Replies:** 0\
**Last updated:** [July 14, 2018, 5:09pm UTC](https://discourse.slicer.org/t/big-thank-you-to-the-community/3486 "2018-07-14T17:09:00Z")

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Hi all, In 1995-1996, I did my 3rd year university thesis on 3D Medical Imaging. This was a program to convert slices of MRI scans to a 3D representation (IIRC I used histogram thresholding + marching cubes). I stumbled…

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## [Problem with Lung lesion segmentation](https://discourse.slicer.org/t/problem-with-lung-lesion-segmentation/3424)

<div class="topic-metadata">

**Author:** [@Daan](https://discourse.slicer.org/u/Daan)\
**Replies:** 9\
**Last updated:** [July 13, 2018, 8:27am UTC](https://discourse.slicer.org/t/problem-with-lung-lesion-segmentation/3424 "2018-07-13T08:27:12Z")

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Dear all, We are using the lung lesion analyser to make segmentations of lung nodules. When we segment the nodule, we also get some kind of planes in our segmentations as can be seen in the image I have added. When we c…

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## [Inward\_outward dicplacement](https://discourse.slicer.org/t/inward-outward-dicplacement/3034)

<div class="topic-metadata">

**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 3\
**Last updated:** [July 11, 2018, 12:02pm UTC](https://discourse.slicer.org/t/inward-outward-dicplacement/3034 "2018-07-11T12:02:53Z")

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Dear Martin and Beatriz, running spharm I am a bit confused by my results. On the left side it seems to be a displacement towards the medial part of the brain … causing an deflation of the medial anterior and medial …

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## [Lung airway segmentation](https://discourse.slicer.org/t/lung-airway-segmentation/2467)

<div class="topic-metadata">

**Author:** [@anitakh1](https://discourse.slicer.org/u/anitakh1)\
**Replies:** 40\
**Last updated:** [June 21, 2018, 3:57pm UTC](https://discourse.slicer.org/t/lung-airway-segmentation/2467 "2018-06-21T15:57:19Z")

</div>

i want to use lung airway segmentation tool in 3D slicer but i can’t find it in the slicer i downloaded. pl help

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## [Editor Function and UKF tractography ](https://discourse.slicer.org/t/editor-function-and-ukf-tractography/3360)

<div class="topic-metadata">

**Author:** [@eclataurora](https://discourse.slicer.org/u/eclataurora)\
**Replies:** 4\
**Last updated:** [July 9, 2018, 7:57pm UTC](https://discourse.slicer.org/t/editor-function-and-ukf-tractography/3360 "2018-07-09T19:57:30Z")

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Hi everyone, I am currently trying to visualize and compare tracts going through the right and left corticospinal tract. I used the Per-Structure Volume tab and added the two structures, going by the code that they came…

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## [Procrustes alignment ](https://discourse.slicer.org/t/procrustes-alignment/3144)

<div class="topic-metadata">

**Author:** [@Pugliese](https://discourse.slicer.org/u/Pugliese)\
**Replies:** 2\
**Last updated:** [July 8, 2018, 3:02am UTC](https://discourse.slicer.org/t/procrustes-alignment/3144 "2018-07-08T03:02:58Z")

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Hi, Beatriz and Martin I was following the tutorial, and I noticed that the rigid-body Procrustes alignment (only translation and/or a rotation) can be used. I was just wondering how the size would be removed (rescalin…

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## [How to perform group analysis after getting the data form SPHARM-PDM 3D-slicer4.8 in MAC\_OS](https://discourse.slicer.org/t/how-to-perform-group-analysis-after-getting-the-data-form-spharm-pdm-3d-slicer4-8-in-mac-os/3314)

<div class="topic-metadata">

**Author:** [@Kailiang\_Wang](https://discourse.slicer.org/u/Kailiang_Wang)\
**Replies:** 0\
**Last updated:** [June 27, 2018, 1:00pm UTC](https://discourse.slicer.org/t/how-to-perform-group-analysis-after-getting-the-data-form-spharm-pdm-3d-slicer4-8-in-mac-os/3314 "2018-06-27T13:00:29Z")

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Dear experts: I have performed the analysis of SPHARM-PDM 3D-slicer4.8 using the ShapeAnalysis\_Data\_Example in MCA\_OS. But I can’t find any valid tool to go on comparing these two groups in slicer of MAC\_OS, and I don’t…

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## [Project pages for PW28](https://discourse.slicer.org/t/project-pages-for-pw28/3100)

<div class="topic-metadata">

**Author:** [@drouin-simon](https://discourse.slicer.org/u/drouin-simon)\
**Replies:** 1\
**Last updated:** [June 7, 2018, 7:16pm UTC](https://discourse.slicer.org/t/project-pages-for-pw28/3100 "2018-06-07T19:16:51Z")

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Hi All, I create a first project page for PW 28 based on the template of PW 27. Is this how we plan to do this?

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## [Interpreting the movement right?](https://discourse.slicer.org/t/interpreting-the-movement-right/2956)

<div class="topic-metadata">

**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 3\
**Last updated:** [June 4, 2018, 12:31pm UTC](https://discourse.slicer.org/t/interpreting-the-movement-right/2956 "2018-06-04T12:31:35Z")

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Dear Martin and Beatriz, trying to understand the movement of the hippocampus in this clinical group (compared to control) thus statistical map and diff mesh vector above. My interpretation is that apart from atroph…

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## [2017.08.29 Hangout](https://discourse.slicer.org/t/2017-08-29-hangout/2982)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [August 29, 2017, 1:51pm UTC](https://discourse.slicer.org/t/2017-08-29-hangout/2982 "2017-08-29T13:51:52Z")

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Hi Slicers, Again this week, we do not have an official agenda and we will be holding an Office hour where anyone is welcome to join to ask questions. Thanks Jc

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## [2017.08.22 Hangout](https://discourse.slicer.org/t/2017-08-22-hangout/2981)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [August 22, 2017, 1:44pm UTC](https://discourse.slicer.org/t/2017-08-22-hangout/2981 "2017-08-22T13:44:53Z")

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Hi Slicers, This week, we do not have an official agenda and we will be holding an Office hour where anyone is welcome to join to ask questions. Thanks Jc

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## [2017.06.20 Hangout \[Cancelled - Summer vacation\]](https://discourse.slicer.org/t/2017-06-20-hangout-cancelled-summer-vacation/2972)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [May 29, 2018, 2:15pm UTC](https://discourse.slicer.org/t/2017-06-20-hangout-cancelled-summer-vacation/2972 "2018-05-29T14:15:23Z")

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This hangout was cancelled because of summer vacation

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## [2017.06.13 Hangout](https://discourse.slicer.org/t/2017-06-13-hangout/2971)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [May 29, 2018, 2:14pm UTC](https://discourse.slicer.org/t/2017-06-13-hangout/2971 "2018-05-29T14:14:14Z")

</div>

See https://www.slicer.org/wiki/Developer\_Meetings/20170613

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## [2017.06.06 Hangout](https://discourse.slicer.org/t/2017-06-06-hangout/2970)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 1\
**Last updated:** [May 29, 2018, 1:57pm UTC](https://discourse.slicer.org/t/2017-06-06-hangout/2970 "2018-05-29T13:57:56Z")

</div>

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## [Small differences](https://discourse.slicer.org/t/small-differences/2825)

<div class="topic-metadata">

**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 1\
**Last updated:** [May 24, 2018, 7:39pm UTC](https://discourse.slicer.org/t/small-differences/2825 "2018-05-24T19:39:57Z")

</div>

Hi Martin and Beau, I am running a shape analysis in which there are very small differences between groups - and at some points one group is larger than the other - in other places it is the opposite … Using the old …

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## [Project Week 28 Preparatory videoconfereces](https://discourse.slicer.org/t/project-week-28-preparatory-videoconfereces/2669)

<div class="topic-metadata">

**Author:** [@Tina\_Kapur](https://discourse.slicer.org/u/Tina_Kapur)\
**Replies:** 4\
**Last updated:** [May 22, 2018, 12:55pm UTC](https://discourse.slicer.org/t/project-week-28-preparatory-videoconfereces/2669 "2018-05-22T12:55:15Z")

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Tuesdays 10am Boston time, starting April 24, 2018

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## [2018.05.15 Hangout](https://discourse.slicer.org/t/2018-05-15-hangout/3007)

<div class="topic-metadata">

**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [May 14, 2018, 4:45pm UTC](https://discourse.slicer.org/t/2018-05-15-hangout/3007 "2018-05-14T16:45:09Z")

</div>

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## [Missing option “Use mean as template”](https://discourse.slicer.org/t/missing-option-use-mean-as-template/2198)

<div class="topic-metadata">

**Author:** [@kullboys](https://discourse.slicer.org/u/kullboys)\
**Replies:** 1\
**Last updated:** [May 9, 2018, 4:27am UTC](https://discourse.slicer.org/t/missing-option-use-mean-as-template/2198 "2018-05-09T04:27:33Z")

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Hello everyone working furhter with Spharm in Slicer-salt I realise there is two thing that was available before that I cannot find now. Use mean as template, The possibility to cancel a run when it is started. The on…

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## [Spharm.vtk vs procalign in group comparison](https://discourse.slicer.org/t/spharm-vtk-vs-procalign-in-group-comparison/2774)

<div class="topic-metadata">

**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 1\
**Last updated:** [May 8, 2018, 1:15pm UTC](https://discourse.slicer.org/t/spharm-vtk-vs-procalign-in-group-comparison/2774 "2018-05-08T13:15:06Z")

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Hi Beatriz and Martin, short question: What is the difference of using the SPHARM.vtk file and the procalign file in a group comparison … will their be big difference? Was wondering as we check the registration looking…

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## [New data loading and visualization tutorial](https://discourse.slicer.org/t/new-data-loading-and-visualization-tutorial/2712)

<div class="topic-metadata">

**Author:** [@cpinter](https://discourse.slicer.org/u/cpinter)\
**Replies:** 0\
**Last updated:** [April 26, 2018, 9:27pm UTC](https://discourse.slicer.org/t/new-data-loading-and-visualization-tutorial/2712 "2018-04-26T21:27:44Z")

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Hi all, I created an updated “Data loading and visualization” tutorial, as the one on the wiki is for Slicer 4.5, which is 3.5 years old, and there are countless things that changed since then. I primarily made this for…

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## [2018.04.17 Hangout](https://discourse.slicer.org/t/2018-04-17-hangout/3006)

<div class="topic-metadata">

**Author:** [@agirault](https://discourse.slicer.org/u/agirault)\
**Replies:** 1\
**Last updated:** [April 17, 2018, 2:07pm UTC](https://discourse.slicer.org/t/2018-04-17-hangout/3006 "2018-04-17T14:07:37Z")

</div>

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