# Community

**URL:** https://discourse.slicer.org/c/community/12.md?no_subcategories=false&page=5

[Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md)

**Page:** 6

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## [2025.08.12 Weekly Meeting](https://discourse.slicer.org/t/2025-08-12-weekly-meeting/44051)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 1\
**Last updated:** [August 19, 2025, 1:18pm UTC](https://discourse.slicer.org/t/2025-08-12-weekly-meeting/44051 "2025-08-19T13:18:47Z")

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Tomorrow, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. a Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Please post to this thread t…

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## [Any help to do simple tractography by simple easy steps?@](https://discourse.slicer.org/t/any-help-to-do-simple-tractography-by-simple-easy-steps/44036)

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**Author:** [@ahmad\_elgamal](https://discourse.slicer.org/u/ahmad_elgamal)\
**Replies:** 5\
**Last updated:** [August 11, 2025, 7:23pm UTC](https://discourse.slicer.org/t/any-help-to-do-simple-tractography-by-simple-easy-steps/44036 "2025-08-11T19:23:58Z")

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Any help to do simple tractography by simple easy steps?@

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## [2025.08.05 Weekly Meeting](https://discourse.slicer.org/t/2025-08-05-weekly-meeting/43957)

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**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 4\
**Last updated:** [August 11, 2025, 12:57pm UTC](https://discourse.slicer.org/t/2025-08-05-weekly-meeting/43957 "2025-08-11T12:57:11Z")

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Tomorrow, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Next release (proposal) Iden…

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## [Using Slicer and 3d printing to support patient advocacy](https://discourse.slicer.org/t/using-slicer-and-3d-printing-to-support-patient-advocacy/44016)

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**Author:** [@GeneRisi](https://discourse.slicer.org/u/GeneRisi)\
**Replies:** 0\
**Last updated:** [August 7, 2025, 11:22pm UTC](https://discourse.slicer.org/t/using-slicer-and-3d-printing-to-support-patient-advocacy/44016 "2025-08-07T23:22:43Z")

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I am not a researcher. I am a retired Engineer and used Slicer3D to process a series of CT scans related to a traumatic brain injury and the subsequent cranial surgeries (removal of temporal bone flap, re-attachment of t…

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## [2025.07.29 Weekly Meeting](https://discourse.slicer.org/t/2025-07-29-weekly-meeting/43883)

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**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 2\
**Last updated:** [August 4, 2025, 7:58pm UTC](https://discourse.slicer.org/t/2025-07-29-weekly-meeting/43883 "2025-08-04T19:58:15Z")

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Later this morning, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Please post to this …

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## [SlicerSALT crashes when loading data](https://discourse.slicer.org/t/slicersalt-crashes-when-loading-data/43686)

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**Author:** [@Chihiro\_Suzuki](https://discourse.slicer.org/u/Chihiro_Suzuki)\
**Replies:** 4\
**Last updated:** [August 3, 2025, 2:42pm UTC](https://discourse.slicer.org/t/slicersalt-crashes-when-loading-data/43686 "2025-08-03T14:42:55Z")

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Dear Slicer community, I am currently planning to use SHPARM to compare the morphology of mammalian paranasal sinuses. To prepare for this, I have been independently studying both SlicerSALT and the SHPARM methodology. …

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## [DeCAL: groupwise analysis](https://discourse.slicer.org/t/decal-groupwise-analysis/43742)

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**Author:** [@MrMarkus](https://discourse.slicer.org/u/MrMarkus)\
**Replies:** 14\
**Last updated:** [July 30, 2025, 3:48pm UTC](https://discourse.slicer.org/t/decal-groupwise-analysis/43742 "2025-07-30T15:48:45Z")

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Dear all, I would like to analyse two groups of skull-data, micro-CT data. The idea is to start with group1 run DeCAL with the data of group1, use the models and fixed LMs to generate an atlas and the alignedLMs (gro…

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## [2025.07.22 Weekly Meeting](https://discourse.slicer.org/t/2025-07-22-weekly-meeting/43805)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 1\
**Last updated:** [July 29, 2025, 1:14pm UTC](https://discourse.slicer.org/t/2025-07-22-weekly-meeting/43805 "2025-07-29T13:14:17Z")

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Today, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. a Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Please post to this thread to p…

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## [Dicom images fail to read](https://discourse.slicer.org/t/dicom-images-fail-to-read/43765)

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**Author:** [@MLPPD](https://discourse.slicer.org/u/MLPPD)\
**Replies:** 6\
**Last updated:** [July 21, 2025, 7:49pm UTC](https://discourse.slicer.org/t/dicom-images-fail-to-read/43765 "2025-07-21T19:49:07Z")

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Hello all, I’m a new user of VMTK, trying to read in a set of processed DICOM images with the command “vmtkimagereader -ifile C:\\Users\\Admin\\Documents\\s0.5-10\\1 -f dicom”. When I do so, it produces the following error: …

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## [2025.07.15 Weekly Meeting](https://discourse.slicer.org/t/2025-07-15-weekly-meeting/43727)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 5\
**Last updated:** [July 18, 2025, 11:05pm UTC](https://discourse.slicer.org/t/2025-07-15-weekly-meeting/43727 "2025-07-18T23:05:04Z")

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Today, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. a Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Please post to this thread to p…

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## [2025.07.08 Weekly Meeting](https://discourse.slicer.org/t/2025-07-08-weekly-meeting/43572)

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**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 3\
**Last updated:** [July 15, 2025, 3:29pm UTC](https://discourse.slicer.org/t/2025-07-08-weekly-meeting/43572 "2025-07-15T15:29:56Z")

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Next week, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Please post to this thread to…

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## [Is it possible in pyradiomics to normalize only the ROI and not the entire image?](https://discourse.slicer.org/t/is-it-possible-in-pyradiomics-to-normalize-only-the-roi-and-not-the-entire-image/43721)

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**Author:** [@Alessandro\_Ghilardi](https://discourse.slicer.org/u/Alessandro_Ghilardi)\
**Replies:** 0\
**Last updated:** [July 15, 2025, 4:26am UTC](https://discourse.slicer.org/t/is-it-possible-in-pyradiomics-to-normalize-only-the-roi-and-not-the-entire-image/43721 "2025-07-15T04:26:26Z")

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I need to know if there’s a standard way to normalize only the ROI. I tried to create a function to do so but in this case filtered versions of the image would be calculated only after the ROI normalization (which means …

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## [SPHARM PDM Correspondence improvement](https://discourse.slicer.org/t/spharm-pdm-correspondence-improvement/23897)

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**Author:** [@lili-yu22](https://discourse.slicer.org/u/lili-yu22)\
**Replies:** 23\
**Last updated:** [July 12, 2025, 8:54pm UTC](https://discourse.slicer.org/t/spharm-pdm-correspondence-improvement/23897 "2025-07-12T20:54:19Z")

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Slicer salt3.0，windows10 when I use“ spharm-pdm correspondence improvement ”the python show "OSError：Invalid argument：“C：//users//…//2022—06—16T11:51:18.762701.csv”. the input models directory: i use the\*SPHARM.vtk. …

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## [How to measure the mandibular condyle morphological changes between two time different points CT?](https://discourse.slicer.org/t/how-to-measure-the-mandibular-condyle-morphological-changes-between-two-time-different-points-ct/25677)

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**Author:** [@wael\_telha](https://discourse.slicer.org/u/wael_telha)\
**Replies:** 6\
**Last updated:** [July 12, 2025, 1:58pm UTC](https://discourse.slicer.org/t/how-to-measure-the-mandibular-condyle-morphological-changes-between-two-time-different-points-ct/25677 "2025-07-12T13:58:00Z")

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Hi 3D Slicer users, I am currently conducting a research to measure the mandibular condyle morphological changes between two time-different points CT: I tried to use SPHARM-PDM to achieve this goal but it is not workin…

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## [Population Analysis Output](https://discourse.slicer.org/t/population-analysis-output/43644)

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**Author:** [@anasmh101](https://discourse.slicer.org/u/anasmh101)\
**Replies:** 4\
**Last updated:** [July 10, 2025, 5:52pm UTC](https://discourse.slicer.org/t/population-analysis-output/43644 "2025-07-10T17:52:38Z")

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Hello everyone, I’m currently working on a project that involves analyzing bone apposition and resorption in mandibular condyles by comparing pre-treatment and post-treatment CBCT scans. Here’s what I’ve done so far: …

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## [Covariate Significance Testing - shape for p-value?](https://discourse.slicer.org/t/covariate-significance-testing-shape-for-p-value/29084)

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**Author:** [@Yuyoung](https://discourse.slicer.org/u/Yuyoung)\
**Replies:** 1\
**Last updated:** [July 8, 2025, 3:21am UTC](https://discourse.slicer.org/t/covariate-significance-testing-shape-for-p-value/29084 "2025-07-08T03:21:51Z")

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Hello everyone, I am currently using version 4.0.1 - 2023-02-08 of SlicerSALT to check out the morphological changes in the human pubic symphyseal surface as a result of aging. Specifically, I am now analyzing four age …

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## [2025.07.01 Weekly Meeting](https://discourse.slicer.org/t/2025-07-01-weekly-meeting/43561)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 3\
**Last updated:** [July 2, 2025, 1:37pm UTC](https://discourse.slicer.org/t/2025-07-01-weekly-meeting/43561 "2025-07-02T13:37:03Z")

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Today, we will be having our next weekly hangout at 10:00 AM ET until 11:00 AM ET. a Anyone is welcome to join at this link: https://bit.ly/slicer-googlemeet-hosted-by-kitware Agenda: Please post to this thread to p…

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## [2025.06.17 Weekly Meeting](https://discourse.slicer.org/t/2025-06-17-weekly-meeting/43388)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 3\
**Last updated:** [July 1, 2025, 2:09pm UTC](https://discourse.slicer.org/t/2025-06-17-weekly-meeting/43388 "2025-07-01T14:09:02Z")

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Today, we will be having our next weekly hangout at 11:00 AM ET until 12:00 PM ET, after the project week meeting. We will be reusing the Project Week Zoom link. Anyone is welcome to join at this link: Launch Meeting -…

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## [Talk2View - The medical viewer you can talk to - Built on 3D Slicer](https://discourse.slicer.org/t/talk2view-the-medical-viewer-you-can-talk-to-built-on-3d-slicer/43423)

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**Author:** [@andy97](https://discourse.slicer.org/u/andy97)\
**Replies:** 4\
**Last updated:** [June 27, 2025, 2:04pm UTC](https://discourse.slicer.org/t/talk2view-the-medical-viewer-you-can-talk-to-built-on-3d-slicer/43423 "2025-06-27T14:04:33Z")

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Hi everyone, We’re excited to share the first very early (and experimental) release of Talk2View, the medical image viewer you can talk to. The idea behind Talk2View is that rather than navigating through complex menus…

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## [Talk2View - The medical viewer you can talk to - Now available as a 3D Slicer extension](https://discourse.slicer.org/t/talk2view-the-medical-viewer-you-can-talk-to-now-available-as-a-3d-slicer-extension/43515)

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**Author:** [@benzwick](https://discourse.slicer.org/u/benzwick)\
**Replies:** 0\
**Last updated:** [June 27, 2025, 7:53am UTC](https://discourse.slicer.org/t/talk2view-the-medical-viewer-you-can-talk-to-now-available-as-a-3d-slicer-extension/43515 "2025-06-27T07:53:39Z")

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Hi everyone, We are thrilled to announce that based on popular demand following the release of our Talk2View desktop application last week, we have now released Talk2View as an extension for 3D Slicer. This means that 3…

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## [Dynamic badge for papers with code, number of citations](https://discourse.slicer.org/t/dynamic-badge-for-papers-with-code-number-of-citations/43505)

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**Author:** [@mau\_igna\_06](https://discourse.slicer.org/u/mau_igna_06)\
**Replies:** 0\
**Last updated:** [June 26, 2025, 5:18pm UTC](https://discourse.slicer.org/t/dynamic-badge-for-papers-with-code-number-of-citations/43505 "2025-06-26T17:18:45Z")

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Hi You can get the markdown code of the dynamic badge just from your paper’s DOI so you can add it to your README.md For example, for some relatively successful paper with more than 500 citations, you get an image th…

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## [Evolutionary S-rep fitting](https://discourse.slicer.org/t/evolutionary-s-rep-fitting/43075)

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**Author:** [@Deep\_Learning](https://discourse.slicer.org/u/Deep_Learning)\
**Replies:** 4\
**Last updated:** [June 23, 2025, 3:30pm UTC](https://discourse.slicer.org/t/evolutionary-s-rep-fitting/43075 "2025-06-23T15:30:00Z")

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Is it possible to batch this with a csv file? Or does it need to be done in python?

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## [Breakout Sessions for PW43](https://discourse.slicer.org/t/breakout-sessions-for-pw43/43209)

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**Author:** [@drouin-simon](https://discourse.slicer.org/u/drouin-simon)\
**Replies:** 6\
**Last updated:** [June 23, 2025, 1:46pm UTC](https://discourse.slicer.org/t/breakout-sessions-for-pw43/43209 "2025-06-23T13:46:43Z")

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Hello Project Week attendees, In the next PW43 preparation meeting (Tuesday, June 10), in addition to the discussion about new projects, we will create a tentative schedule for breakout sessions. Until then, please repl…

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## [Project Week 43 is starting on Monday! (last minute instructions)](https://discourse.slicer.org/t/project-week-43-is-starting-on-monday-last-minute-instructions/43438)

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**Author:** [@drouin-simon](https://discourse.slicer.org/u/drouin-simon)\
**Replies:** 0\
**Last updated:** [June 20, 2025, 2:52pm UTC](https://discourse.slicer.org/t/project-week-43-is-starting-on-monday-last-minute-instructions/43438 "2025-06-20T14:52:08Z")

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Dear Project Week attendees, We are looking forward to welcoming you in Montreal next Monday for the 43rd edition of the NA-MIC Project Week. Doors will open at 8am on Monday and coffee will be served starting at 9am. …

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## [setting up pyradiomics in python3 virtual env't](https://discourse.slicer.org/t/setting-up-pyradiomics-in-python3-virtual-envt/43434)

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**Author:** [@tsc](https://discourse.slicer.org/u/tsc)\
**Replies:** 0\
**Last updated:** [June 20, 2025, 2:47pm UTC](https://discourse.slicer.org/t/setting-up-pyradiomics-in-python3-virtual-envt/43434 "2025-06-20T14:47:41Z")

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I am having some trouble with pyradiomics in my python3 virtual env’t on one particular server. The issue may be that numpy 1.21.5 is present on the server and numpy 2.2.6 is present in the virtual env’t. Pyradiomics …

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## [Biomedical engineering student introduction](https://discourse.slicer.org/t/biomedical-engineering-student-introduction/43416)

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**Author:** [@Ola20](https://discourse.slicer.org/u/Ola20)\
**Replies:** 0\
**Last updated:** [June 18, 2025, 7:17pm UTC](https://discourse.slicer.org/t/biomedical-engineering-student-introduction/43416 "2025-06-18T19:17:08Z")

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Hello everyone, I’m Ajigbotosho Hammed , a Biomedical Engineering student with a passion for applying data science to medical imaging. I’m excited to join this group and leverage the community’s expertise to explore inno…

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## [Create a script to use TotalSegmentator from script for 2 small tasks](https://discourse.slicer.org/t/create-a-script-to-use-totalsegmentator-from-script-for-2-small-tasks/43232)

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**Author:** [@Sebastiets](https://discourse.slicer.org/u/Sebastiets)\
**Replies:** 1\
**Last updated:** [June 16, 2025, 7:53pm UTC](https://discourse.slicer.org/t/create-a-script-to-use-totalsegmentator-from-script-for-2-small-tasks/43232 "2025-06-16T19:53:55Z")

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Hi, I have a small project and being pretty new to programming, I’m having difficulties finding the right code to call some option. Let me describe what I’m trying to do and the steps. I also have an other question not…

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## [Project Week 43 Prep Meeting (June 17th)](https://discourse.slicer.org/t/project-week-43-prep-meeting-june-17th/43348)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 0\
**Last updated:** [June 13, 2025, 9:00pm UTC](https://discourse.slicer.org/t/project-week-43-prep-meeting-june-17th/43348 "2025-06-13T21:00:59Z")

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Dear Project Week community, The next project week preparation meeting will be next Tuesday, June 17, at 10:00 AM ET. If you are interested in discussing a possible project, please reply to this post with your topic. Y…

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## [2025.06.10 Weekly Meeting](https://discourse.slicer.org/t/2025-06-10-weekly-meeting/43288)

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**Author:** [@Sam\_Horvath](https://discourse.slicer.org/u/Sam_Horvath)\
**Replies:** 1\
**Last updated:** [June 10, 2025, 6:40pm UTC](https://discourse.slicer.org/t/2025-06-10-weekly-meeting/43288 "2025-06-10T18:40:31Z")

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Today, we will be having our next weekly hangout at 11:00 AM ET until 12:00 PM ET, after the project week meeting. We will be reusing the Project Week Zoom link. Anyone is welcome to join at this link: Launch Meeting -…

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## [2025.06.03 Weekly Meeting](https://discourse.slicer.org/t/2025-06-03-weekly-meeting/43208)

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**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 1\
**Last updated:** [June 10, 2025, 3:06pm UTC](https://discourse.slicer.org/t/2025-06-03-weekly-meeting/43208 "2025-06-10T15:06:20Z")

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TODAY, we will be having our next weekly hangout at 11:00 AM ET until 12:00 PM ET, after the project week meeting. We will be reusing the Project Week Zoom link. Anyone is welcome to join at this link: Launch Meeting -…

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