# SlicerSALT

**URL:** https://discourse.slicer.org/c/community/slicer-salt/14.md?page=3

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**Page:** 4

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## [Spharm.vtk vs procalign in group comparison](https://discourse.slicer.org/t/spharm-vtk-vs-procalign-in-group-comparison/2774)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 1\
**Last updated:** [May 8, 2018, 1:15pm UTC](https://discourse.slicer.org/t/spharm-vtk-vs-procalign-in-group-comparison/2774 "2018-05-08T13:15:06Z")

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Hi Beatriz and Martin, short question: What is the difference of using the SPHARM.vtk file and the procalign file in a group comparison … will their be big difference? Was wondering as we check the registration looking…

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## [Registration errors](https://discourse.slicer.org/t/registration-errors/2252)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 3\
**Last updated:** [March 9, 2018, 2:22pm UTC](https://discourse.slicer.org/t/registration-errors/2252 "2018-03-09T14:22:19Z")

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Hi Bea, running shape on large number of hippocampus again, And it seems that registration is going wrong - look at attached image. I think I asked you before but I am a bit confused why it is doing a such a bad job…

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## [Proceed to surfstat](https://discourse.slicer.org/t/proceed-to-surfstat/1229)

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**Author:** [@iPsych](https://discourse.slicer.org/u/iPsych)\
**Replies:** 16\
**Last updated:** [January 22, 2018, 4:41pm UTC](https://discourse.slicer.org/t/proceed-to-surfstat/1229 "2018-01-22T16:41:36Z")

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Deal all, I am trying to run more complex statistics using surfstat. However the result of SPHARM-PDM or SlicerSALT ( \*ellalign.meta and \*ellalign.coef) seems different from the structures of data used in existing tut…

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## [ShapeAnalysisModule](https://discourse.slicer.org/t/shapeanalysismodule/1869)

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**Author:** [@bpaniagua](https://discourse.slicer.org/u/bpaniagua)\
**Replies:** 1\
**Last updated:** [January 18, 2018, 3:22pm UTC](https://discourse.slicer.org/t/shapeanalysismodule/1869 "2018-01-18T15:22:36Z")

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Dear Beatriz, I enjoyed using the Slicer application to analyse hippocampal shapes in TLE patients. However, in a few subjects the ShapeAnalysisModule was not working (5 out of 222 subjects). The files either fail or t…

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## [Bad registration of Freesurfer segmentation of the hippocampus](https://discourse.slicer.org/t/bad-registration-of-freesurfer-segmentation-of-the-hippocampus/1300)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 2\
**Last updated:** [November 1, 2017, 12:43pm UTC](https://discourse.slicer.org/t/bad-registration-of-freesurfer-segmentation-of-the-hippocampus/1300 "2017-11-01T12:43:34Z")

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Hi, was wondering if anyone have experience with freesurfer segmentation of the hippocampus in SPHARM. I tried various tricks but the registration really does not work. It is obvious that there are several irregulariti…

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## [Odd looking hippocampus](https://discourse.slicer.org/t/odd-looking-hippocampus/1154)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 3\
**Last updated:** [October 6, 2017, 12:28pm UTC](https://discourse.slicer.org/t/odd-looking-hippocampus/1154 "2017-10-06T12:28:27Z")

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HI Beatriz and Martin, I am running the shape-tool and I get very odd looking hippocampus after running the shapeanalysis Mancova wizard. I have no clue what is going on. I am converting the \_hippocampus\_left\_roi\_pp\_…

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## [No groups were found](https://discourse.slicer.org/t/no-groups-were-found/1189)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 1\
**Last updated:** [October 6, 2017, 12:26pm UTC](https://discourse.slicer.org/t/no-groups-were-found/1189 "2017-10-06T12:26:29Z")

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Dear Bea, Running the shape\_analysis mancova I get the following error: No groups were found in file /home/olof/Desktop/TotalSubiculum\_R/Step3\_ParaToSPHARMMesh/02c57db6-7b88-47b9-9ac2-0206a78bb6f1\_Subic\_R.meta However…

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## [Missing option "Use mean as template"](https://discourse.slicer.org/t/missing-option-use-mean-as-template/1164)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 1\
**Last updated:** [October 3, 2017, 9:37pm UTC](https://discourse.slicer.org/t/missing-option-use-mean-as-template/1164 "2017-10-03T21:37:55Z")

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Hi Beatriz, working furhter with Spharm in Slicer-salt I realise there is two thing that was available before that I cannot find now. Use mean as template, The possibility to cancel a run when it is started. The only …

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## [odd looking Hippocampus](https://discourse.slicer.org/t/odd-looking-hippocampus/1165)

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**Author:** [@Olof](https://discourse.slicer.org/u/Olof)\
**Replies:** 1

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Hi Beatriz, As you suggested that my previous results may be related to bad orientataion of image I included one of the subjects as a template (the guy on the left) - still my mean image looks very strange … this ti…

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## [Shape analysis between non-similar objects?](https://discourse.slicer.org/t/shape-analysis-between-non-similar-objects/1122)

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**Author:** [@shahrokh](https://discourse.slicer.org/u/shahrokh)\
**Replies:** 4\
**Last updated:** [October 2, 2017, 12:43pm UTC](https://discourse.slicer.org/t/shape-analysis-between-non-similar-objects/1122 "2017-10-02T12:43:56Z")

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Dear SPHARM and SlicerSALT developers and users Hi, I have some problems about shape analysis between non-similar objects. Suppose I have 5 groups with names A, B, C, D and E and in each group there are 8 meat samples s…

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## [SPHARM-PDM installation on Windows 10](https://discourse.slicer.org/t/spharm-pdm-installation-on-windows-10/979)

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**Author:** [@laurapascal](https://discourse.slicer.org/u/laurapascal)\
**Replies:** 2\
**Last updated:** [September 25, 2017, 1:57pm UTC](https://discourse.slicer.org/t/spharm-pdm-installation-on-windows-10/979 "2017-09-25T13:57:50Z")

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Catharina De Rosa wrote on Wed, August 30, 2017: I download extension to use Spharm-pdm on 3D Slicer for Windows 10. As I tried to use the tools, it also pop up mensages that the program has stopped working. Messages…

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## [Publications with ShapePopulationViewer](https://discourse.slicer.org/t/publications-with-shapepopulationviewer/1090)

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**Author:** [@alexk](https://discourse.slicer.org/u/alexk)\
**Replies:** 3\
**Last updated:** [September 20, 2017, 6:42pm UTC](https://discourse.slicer.org/t/publications-with-shapepopulationviewer/1090 "2017-09-20T18:42:43Z")

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Hello . I am looking for the available publications where we find the application of the SPV module and the methodological description. Thanks

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## [Create a tempate for amygdala](https://discourse.slicer.org/t/create-a-tempate-for-amygdala/1037)

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**Author:** [@bpaniagua](https://discourse.slicer.org/u/bpaniagua)\
**Replies:** 1\
**Last updated:** [September 11, 2017, 8:38pm UTC](https://discourse.slicer.org/t/create-a-tempate-for-amygdala/1037 "2017-09-11T20:38:46Z")

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Hi Beatriz I am a Msc student in Neuroscience in Ege University, Turkey. I am doing shape analysis for amygdala. I could not find a template for amygdala. So,I would like to create template. I have 30 amygdala in my po…

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## [Is there any statistics function implement schedule?](https://discourse.slicer.org/t/is-there-any-statistics-function-implement-schedule/907)

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**Author:** [@iPsych](https://discourse.slicer.org/u/iPsych)\
**Replies:** 1\
**Last updated:** [August 31, 2017, 3:53pm UTC](https://discourse.slicer.org/t/is-there-any-statistics-function-implement-schedule/907 "2017-08-31T15:53:58Z")

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ShapeAnalysis MANCOVA seems outdated. Is there any timetable for new stat function implementation?

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## [Superimposing two different models](https://discourse.slicer.org/t/superimposing-two-different-models/406)

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**Author:** [@bpaniagua](https://discourse.slicer.org/u/bpaniagua)\
**Replies:** 0\
**Last updated:** [May 31, 2017, 12:15pm UTC](https://discourse.slicer.org/t/superimposing-two-different-models/406 "2017-05-31T12:15:35Z")

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Junwooram wrote on Tue, May 30, 2017 at 6:49 PM One more question please… I want to superimpose two different models, but It is not easy to find out the way. How can I do that? First, I want to orient the first mod…

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## [A question for OS X support](https://discourse.slicer.org/t/a-question-for-os-x-support/339)

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**Author:** [@hina-shah](https://discourse.slicer.org/u/hina-shah)\
**Replies:** 1\
**Last updated:** [May 18, 2017, 3:43pm UTC](https://discourse.slicer.org/t/a-question-for-os-x-support/339 "2017-05-18T15:43:35Z")

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Question originally posted on slicer-users@bwh.harvard.ed. Dear SlicerSALT team, First appreciate for this amazing update. However, Girder compiled version seems not works in OS X 10.12 Sierra. Currently, does it sup…

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## [SlicerSALT website](https://discourse.slicer.org/t/slicersalt-website/101)

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**Author:** [@bpaniagua](https://discourse.slicer.org/u/bpaniagua)\
**Replies:** 0\
**Last updated:** [April 13, 2017, 1:14pm UTC](https://discourse.slicer.org/t/slicersalt-website/101 "2017-04-13T13:14:03Z")

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Hi everybody, We have a website! https://bpaniagua.github.io/slicersalt.github.io/ The slicerSALT package is still pretty much an empty boilerplate at this point, and we hope to start incorporating SlicerSALT exten…

[Previous page](https://discourse.slicer.org/c/community/slicer-salt/14.md?page=2)