# Support

**URL:** https://discourse.slicer.org/c/support/11.md?no_subcategories=false&page=59

[Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md)

**Page:** 60

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## [Video clip of slice scrolling](https://discourse.slicer.org/t/video-clip-of-slice-scrolling/40834)

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**Author:** [@mohammed\_alshakhas](https://discourse.slicer.org/u/mohammed_alshakhas)\
**Replies:** 3\
**Last updated:** [December 26, 2024, 11:43am UTC](https://discourse.slicer.org/t/video-clip-of-slice-scrolling/40834 "2024-12-26T11:43:53Z")

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would be amazing if its possible to export recording of slice scrolling . i like this instead of needing to save multiple slices .

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## [3d rendering of Coral Core CT scans](https://discourse.slicer.org/t/3d-rendering-of-coral-core-ct-scans/40822)

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**Author:** [@Caleb\_Prouty](https://discourse.slicer.org/u/Caleb_Prouty)\
**Replies:** 4\
**Last updated:** [December 26, 2024, 4:29am UTC](https://discourse.slicer.org/t/3d-rendering-of-coral-core-ct-scans/40822 "2024-12-26T04:29:57Z")

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Hi, I have a data set of a bunch of .Tiff images from a CT scan of a Coral core. I would like to make a 3d render similar to what can be seen in here: Computed tomographic image animation of a coral core So far I’ve ma…

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## [Translation into Czech](https://discourse.slicer.org/t/translation-into-czech/40849)

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**Author:** [@Max\_24](https://discourse.slicer.org/u/Max_24)\
**Replies:** 0\
**Last updated:** [December 25, 2024, 5:48pm UTC](https://discourse.slicer.org/t/translation-into-czech/40849 "2024-12-25T17:48:09Z")

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I want to translate into Czech. I need permission. @Max\_35

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## [Strategies for Batch/Sequential segmentation of 3D volumes with MONAI Auto3DSeg?](https://discourse.slicer.org/t/strategies-for-batch-sequential-segmentation-of-3d-volumes-with-monai-auto3dseg/40844)

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**Author:** [@Yue-Hin\_Loke1](https://discourse.slicer.org/u/Yue-Hin_Loke1)\
**Replies:** 0\
**Last updated:** [December 25, 2024, 3:59am UTC](https://discourse.slicer.org/t/strategies-for-batch-sequential-segmentation-of-3d-volumes-with-monai-auto3dseg/40844 "2024-12-25T03:59:03Z")

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Hi there, I’ve been able to create a Python extension that loops automatically uses Auto3DSeg to automatically segments multiple .nrrd files sequentially. I do notice that the turnround time can be long (~ 1.5 minute …

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## [How to Modify the Default Threshold Values in Segment Editor for Custom Segmentation?](https://discourse.slicer.org/t/how-to-modify-the-default-threshold-values-in-segment-editor-for-custom-segmentation/40727)

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**Author:** [@VirOrange](https://discourse.slicer.org/u/VirOrange)\
**Replies:** 3\
**Last updated:** [December 25, 2024, 2:40am UTC](https://discourse.slicer.org/t/how-to-modify-the-default-threshold-values-in-segment-editor-for-custom-segmentation/40727 "2024-12-25T02:40:38Z")

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Operating system:win11 Slicer version:5.6.2 Hello everyone, I’m working on developing a custom module in Slicer and started by modifying existing components. In the Segment Editor module, I would like to modify the Th…

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## [Moving segment from a segmentation to another causes crash](https://discourse.slicer.org/t/moving-segment-from-a-segmentation-to-another-causes-crash/40836)

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**Author:** [@Julien\_D](https://discourse.slicer.org/u/Julien_D)\
**Replies:** 1\
**Last updated:** [December 24, 2024, 12:47am UTC](https://discourse.slicer.org/t/moving-segment-from-a-segmentation-to-another-causes-crash/40836 "2024-12-24T00:47:46Z")

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Hello, I’m trying to add a geometry (a 25mm x 20mm cylinder created in Fusion 360) in an STL format and then move it to my Segmentation with my other segments but doing so causes the app to run out of memory. I need to …

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## [Flattening Curved Patch using the Baffle Planner Module](https://discourse.slicer.org/t/flattening-curved-patch-using-the-baffle-planner-module/18093)

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**Author:** [@Fluvio\_Lobo](https://discourse.slicer.org/u/Fluvio_Lobo)\
**Replies:** 11\
**Last updated:** [June 17, 2021, 1:56am UTC](https://discourse.slicer.org/t/flattening-curved-patch-using-the-baffle-planner-module/18093 "2021-06-17T01:56:40Z")

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Hello, I have been using the Baffle Planner module for cranial flaps and it works wonders! I want to expand its usage to create curved bone flaps that can be harvested from a thick part of the skull and used to form a …

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## [Create plane on 3D model - problem with landmarks](https://discourse.slicer.org/t/create-plane-on-3d-model-problem-with-landmarks/40796)

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**Author:** [@Konstantin](https://discourse.slicer.org/u/Konstantin)\
**Replies:** 8\
**Last updated:** [December 22, 2024, 6:29am UTC](https://discourse.slicer.org/t/create-plane-on-3d-model-problem-with-landmarks/40796 "2024-12-22T06:29:24Z")

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Good Day. I want to create a plane on the 3D model of the calcaneus. I installed the module “Angle planes”. According to the guide, I click the “add landmark” button and try to manually place landmarks. But instead, land…

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## [Importing and exporting 3D TIFs](https://discourse.slicer.org/t/importing-and-exporting-3d-tifs/40713)

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**Author:** [@Kajper](https://discourse.slicer.org/u/Kajper)\
**Replies:** 16\
**Last updated:** [December 21, 2024, 3:04am UTC](https://discourse.slicer.org/t/importing-and-exporting-3d-tifs/40713 "2024-12-21T03:04:24Z")

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Hello. I have received a CT scan in form of 3D tiff. It looks like a single image, but according to curator it contains all tiffs build in. However, the Slicer seem to not be able to read it properly (see attached) Al…

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## [local threshold: bugs or features?](https://discourse.slicer.org/t/local-threshold-bugs-or-features/40671)

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**Author:** [@sulli419](https://discourse.slicer.org/u/sulli419)\
**Replies:** 4\
**Last updated:** [December 20, 2024, 8:17pm UTC](https://discourse.slicer.org/t/local-threshold-bugs-or-features/40671 "2024-12-20T20:17:25Z")

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First off thanks for this fantastic software. I see a small team of people helping in the forums, so really appreciate what you do and imagine it is an immense amount of work! I’m relatively inexperienced with slicer. …

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## [Warning messages during Extract Centerline Execution](https://discourse.slicer.org/t/warning-messages-during-extract-centerline-execution/40817)

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**Author:** [@SANTIAGO\_PENDON\_MING](https://discourse.slicer.org/u/SANTIAGO_PENDON_MING)\
**Replies:** 0\
**Last updated:** [December 20, 2024, 12:09pm UTC](https://discourse.slicer.org/t/warning-messages-during-extract-centerline-execution/40817 "2024-12-20T12:09:13Z")

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Hi to everyone. Today I’m involved in a pipeline that uses ExtractCenterline module to programmatically generate one centerline from one vessel. This pipeline regenerates the segment several times until the final segmen…

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## [Modul "Export Tractography to PLY (mesh)" doesn't work in Slicer 5.7.0](https://discourse.slicer.org/t/modul-export-tractography-to-ply-mesh-doesnt-work-in-slicer-5-7-0/40805)

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**Author:** [@Elisabeth](https://discourse.slicer.org/u/Elisabeth)\
**Replies:** 1\
**Last updated:** [December 19, 2024, 8:26pm UTC](https://discourse.slicer.org/t/modul-export-tractography-to-ply-mesh-doesnt-work-in-slicer-5-7-0/40805 "2024-12-19T20:26:06Z")

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Problem report for Slicer 5.7.0-2024-12-13 win-amd64: \[please describe expected and actual behavior\] Dear community, I’ve done tractography in the 3D Slicer 5.7.0 software and now I planned to export my fiber bundle as…

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## [Tracking Ball Fiducials in Slicer IGT](https://discourse.slicer.org/t/tracking-ball-fiducials-in-slicer-igt/40806)

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**Author:** [@goodac](https://discourse.slicer.org/u/goodac)\
**Replies:** 0\
**Last updated:** [December 19, 2024, 5:07pm UTC](https://discourse.slicer.org/t/tracking-ball-fiducials-in-slicer-igt/40806 "2024-12-19T17:07:03Z")

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Hello, I have been working on tracking fiducials for a while, and have managed to run the ArUco tracking with Plus Server successfully. However, we would like to be able to track instruments with standard navigation ar…

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## [Automatically Generated Reformat Planes in 3D Slicer](https://discourse.slicer.org/t/automatically-generated-reformat-planes-in-3d-slicer/40804)

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**Author:** [@Yen-Chen](https://discourse.slicer.org/u/Yen-Chen)\
**Replies:** 0\
**Last updated:** [December 19, 2024, 4:05pm UTC](https://discourse.slicer.org/t/automatically-generated-reformat-planes-in-3d-slicer/40804 "2024-12-19T16:05:36Z")

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The image below shows a screenshot of the reformat plane generated automatically by 3D Slicer. As you can see, I haven’t made any changes after loading the DICOM file. However, the generated reformat plane appears rotate…

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## [Shapepopulationviewer can't open the fiducial files](https://discourse.slicer.org/t/shapepopulationviewer-cant-open-the-fiducial-files/40798)

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**Author:** [@lili-yu22](https://discourse.slicer.org/u/lili-yu22)\
**Replies:** 1\
**Last updated:** [December 19, 2024, 9:09am UTC](https://discourse.slicer.org/t/shapepopulationviewer-cant-open-the-fiducial-files/40798 "2024-12-19T09:09:07Z")

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when I open a mesh.then open it’s fiducial.the slicersalt 5.0 crash.how I can put the fiducial on the mesh in the shape population viewer like the picture

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## [Is it possible to see the message from qWarning()?](https://discourse.slicer.org/t/is-it-possible-to-see-the-message-from-qwarning/40799)

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**Author:** [@Xiaojie\_Guo](https://discourse.slicer.org/u/Xiaojie_Guo)\
**Replies:** 0\
**Last updated:** [December 19, 2024, 9:04am UTC](https://discourse.slicer.org/t/is-it-possible-to-see-the-message-from-qwarning/40799 "2024-12-19T09:04:11Z")

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Hi, all I saw there were some codes using qWarning() in Slicer source code. If I don’t build Slicer from source code, I installed the stable version which is download from the website. Is it possible to see the message …

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## [100% usage of CPU and 0% of GPU while editing models in 3D](https://discourse.slicer.org/t/100-usage-of-cpu-and-0-of-gpu-while-editing-models-in-3d/40733)

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**Author:** [@MaxVs](https://discourse.slicer.org/u/MaxVs)\
**Replies:** 5\
**Last updated:** [December 19, 2024, 6:13am UTC](https://discourse.slicer.org/t/100-usage-of-cpu-and-0-of-gpu-while-editing-models-in-3d/40733 "2024-12-19T06:13:33Z")

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Hi! I have an issue. While editing my 3D models in 3D view (smoothing, holes filling or median) it takes so long to perform, whats more I can see 100% usage of my CPU and 0% of my GPU for the whole time. GPU Nvidia Ge…

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## [Annotation interaction](https://discourse.slicer.org/t/annotation-interaction/40775)

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**Author:** [@mohammed\_alshakhas](https://discourse.slicer.org/u/mohammed_alshakhas)\
**Replies:** 1\
**Last updated:** [December 19, 2024, 12:39am UTC](https://discourse.slicer.org/t/annotation-interaction/40775 "2024-12-19T00:39:00Z")

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it would be great if annotation can be made e.g line , texts etc. . more importantly , the annotations with markups if possible to be interactive . like in the example and many other for my use . i want to move the te…

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## [How can i solve build error?](https://discourse.slicer.org/t/how-can-i-solve-build-error/40791)

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**Author:** [@nadayoda59](https://discourse.slicer.org/u/nadayoda59)\
**Replies:** 0\
**Last updated:** [December 18, 2024, 10:30pm UTC](https://discourse.slicer.org/t/how-can-i-solve-build-error/40791 "2024-12-18T22:30:51Z")

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I built it in release mode, but I can’t seem to read that class. Of course, I imported a header file at the top of the code. I don’t know where the problem is, how can I fix it?

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## [brain stem segmentation](https://discourse.slicer.org/t/brain-stem-segmentation/40790)

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**Author:** [@nurbiomedical](https://discourse.slicer.org/u/nurbiomedical)\
**Replies:** 0\
**Last updated:** [December 18, 2024, 10:30pm UTC](https://discourse.slicer.org/t/brain-stem-segmentation/40790 "2024-12-18T22:30:44Z")

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i have to segment the brain stem for my project but i am confused with the which dicom image should i choose to get the perfect segment of the stem? what should the image look like ?

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## [segmentation of artery](https://discourse.slicer.org/t/segmentation-of-artery/40788)

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**Author:** [@vivi](https://discourse.slicer.org/u/vivi)\
**Replies:** 0\
**Last updated:** [December 18, 2024, 10:30pm UTC](https://discourse.slicer.org/t/segmentation-of-artery/40788 "2024-12-18T22:30:20Z")

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hello, i have segmented the vessel it is solid segmentation. i want to simulated that but i cannot do it somebody please help

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## [Error in PyTorch installation](https://discourse.slicer.org/t/error-in-pytorch-installation/39880)

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**Author:** [@Ben](https://discourse.slicer.org/u/Ben)\
**Replies:** 9\
**Last updated:** [December 18, 2024, 3:47pm UTC](https://discourse.slicer.org/t/error-in-pytorch-installation/39880 "2024-12-18T15:47:07Z")

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I am installing Totalsegmentation in Windows 10, after the installation, I continued to install the PyTorch, and got the error: I already uninstall, restart, reinstall, and restart, there is no difference. My setup …

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## [SlicerVirtualReality extension for recent versions](https://discourse.slicer.org/t/slicervirtualreality-extension-for-recent-versions/33476)

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**Author:** [@Billuc](https://discourse.slicer.org/u/Billuc)\
**Replies:** 10\
**Last updated:** [December 18, 2024, 3:26pm UTC](https://discourse.slicer.org/t/slicervirtualreality-extension-for-recent-versions/33476 "2024-12-18T15:26:35Z")

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Hi ! I am new to Slicer, but I am interested in the SlicerVirtualReality extension. I wanted to try it with the latest versions of Slicer (5.6 or 5.7), but I couldn’t find it in the extension manager, while I could find…

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## [How to disable automatic switch to master volume with Segment editor](https://discourse.slicer.org/t/how-to-disable-automatic-switch-to-master-volume-with-segment-editor/21259)

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**Author:** [@Michele\_Bailo](https://discourse.slicer.org/u/Michele_Bailo)\
**Replies:** 11\
**Last updated:** [December 18, 2024, 1:39pm UTC](https://discourse.slicer.org/t/how-to-disable-automatic-switch-to-master-volume-with-segment-editor/21259 "2024-12-18T13:39:44Z")

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ichele\_BailoMickyB 1m Hi there, I’m working with segmentations to be checked on multiple (eight) coregistered volumes that are simultaneously displayed in the layout. However, every time I change the master volume or …

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## [File errors Importing Dicom into slicer](https://discourse.slicer.org/t/file-errors-importing-dicom-into-slicer/40102)

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**Author:** [@Newbie101](https://discourse.slicer.org/u/Newbie101)\
**Replies:** 14\
**Last updated:** [December 18, 2024, 12:12pm UTC](https://discourse.slicer.org/t/file-errors-importing-dicom-into-slicer/40102 "2024-12-18T12:12:53Z")

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Operating system: win 10x 64 Slicer version:5.6.2 Expected behavior: Actual behavior: showing errors which when i use the supplied software…given to me intelerad.inteleviewer all files display as intended. The version…

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## [Failure to load RTSTRUCT dicom file](https://discourse.slicer.org/t/failure-to-load-rtstruct-dicom-file/33504)

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**Author:** [@Michele\_R](https://discourse.slicer.org/u/Michele_R)\
**Replies:** 7\
**Last updated:** [December 18, 2024, 10:39am UTC](https://discourse.slicer.org/t/failure-to-load-rtstruct-dicom-file/33504 "2024-12-18T10:39:14Z")

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Operating system: MacOS Ventura Slicer version: 5.7.0 Hello, I am trying to load an image set including a 3D MRI with RT files containing volumetric and dosimetric information that have been exported from a DICOM view…

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## [3D segmentation does not finish](https://discourse.slicer.org/t/3d-segmentation-does-not-finish/40732)

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**Author:** [@dr\_drcadcam](https://discourse.slicer.org/u/dr_drcadcam)\
**Replies:** 1\
**Last updated:** [December 17, 2024, 8:04pm UTC](https://discourse.slicer.org/t/3d-segmentation-does-not-finish/40732 "2024-12-17T20:04:57Z")

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Problem report for Slicer 5.7.0-2024-04-25 win-amd64 Good afternoon I installed my license on my third computer with Windows 11. The 3dSlicer segmentation is loading but does not finish. It keeps loading… As shown in th…

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## [Data format of the probabilistic segmentation map for UKF Tractography module?](https://discourse.slicer.org/t/data-format-of-the-probabilistic-segmentation-map-for-ukf-tractography-module/40730)

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**Author:** [@Ilya\_Pshenichnyy](https://discourse.slicer.org/u/Ilya_Pshenichnyy)\
**Replies:** 0\
**Last updated:** [December 17, 2024, 5:42pm UTC](https://discourse.slicer.org/t/data-format-of-the-probabilistic-segmentation-map-for-ukf-tractography-module/40730 "2024-12-17T17:42:46Z")

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I have been trying to use Option 2 in Seeding Options ( Documentation/Nightly/Modules/UKFTractography - Slicer Wiki). I used Tracula generated probability distribution volume, normalized it to have 0 to 1 values as the d…

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## [How to create nii.gz inside LabelsTr directory by using 3D Slicer or python script? ](https://discourse.slicer.org/t/how-to-create-nii-gz-inside-labelstr-directory-by-using-3d-slicer-or-python-script/40729)

<div class="topic-metadata">

**Author:** [@Derek\_Wang](https://discourse.slicer.org/u/Derek_Wang)\
**Replies:** 0\
**Last updated:** [December 17, 2024, 5:42pm UTC](https://discourse.slicer.org/t/how-to-create-nii-gz-inside-labelstr-directory-by-using-3d-slicer-or-python-script/40729 "2024-12-17T17:42:24Z")

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I use nnunet to train skulls. I have collected 50 skull dicom datasets and converted them into nii.gz formats. I was unclear how to create nii.gz inside LabelsTr directory by using 3D Slicer or python script? Thanks a lo…

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## [How to hide python code using CMakeList](https://discourse.slicer.org/t/how-to-hide-python-code-using-cmakelist/40720)

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**Author:** [@calvinsuzuki](https://discourse.slicer.org/u/calvinsuzuki)\
**Replies:** 0\
**Last updated:** [December 16, 2024, 8:29pm UTC](https://discourse.slicer.org/t/how-to-hide-python-code-using-cmakelist/40720 "2024-12-16T20:29:47Z")

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Hey everyone, I’m confused about python code obfuscation. This matter was already discussed on the community But I couldn’t see how to do it. Which CMakeList should I configure? And when this should be executed? I’m…

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