# Support

**URL:** https://discourse.slicer.org/c/support/11.md?page=170

[Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md)

**Page:** 171

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## [Is there any way to take probed volume and map it to the elements instead of nodes?](https://discourse.slicer.org/t/is-there-any-way-to-take-probed-volume-and-map-it-to-the-elements-instead-of-nodes/28683)

<div class="topic-metadata">

**Author:** [@fea\_99](https://discourse.slicer.org/u/fea_99)\
**Replies:** 2\
**Last updated:** [March 30, 2023, 6:50pm UTC](https://discourse.slicer.org/t/is-there-any-way-to-take-probed-volume-and-map-it-to-the-elements-instead-of-nodes/28683 "2023-03-30T18:50:33Z")

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I believe FEBio requires that the scalar data be mapped onto the elements instead of the nodes themselves, is there any way to instead probe the data onto the elements, or even move them from the nodes to the elements?

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## [Slicer remote debug in pycharm](https://discourse.slicer.org/t/slicer-remote-debug-in-pycharm/28672)

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**Author:** [@f1oNae](https://discourse.slicer.org/u/f1oNae)\
**Replies:** 0\
**Last updated:** [March 30, 2023, 7:28am UTC](https://discourse.slicer.org/t/slicer-remote-debug-in-pycharm/28672 "2023-03-30T07:28:17Z")

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I am trying to create extension in slicer.When I connect pycharm to debug,something go wrong. Does this affect my debugging, and why do I get this error?

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## [Markup script misplacing control points](https://discourse.slicer.org/t/markup-script-misplacing-control-points/28638)

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**Author:** [@Kae1](https://discourse.slicer.org/u/Kae1)\
**Replies:** 3\
**Last updated:** [March 30, 2023, 1:36am UTC](https://discourse.slicer.org/t/markup-script-misplacing-control-points/28638 "2023-03-30T01:36:38Z")

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My mark up script is placing mark up control points inaccurately when loaded at a later point: I am creating a mark up script by placing markup control points manually, then saving the mark up script as a json file. Late…

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## [General Registration (BRAINS) does not seem to work properly](https://discourse.slicer.org/t/general-registration-brains-does-not-seem-to-work-properly/28650)

<div class="topic-metadata">

**Author:** [@luke90](https://discourse.slicer.org/u/luke90)\
**Replies:** 1\
**Last updated:** [March 29, 2023, 5:53pm UTC](https://discourse.slicer.org/t/general-registration-brains-does-not-seem-to-work-properly/28650 "2023-03-29T17:53:08Z")

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Hello guys, I have done a registration in the general registration module (BRAINS) but the output image volume does not match with the fixed image volume. The goal is to apply a linear transformation (rotation and trans…

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## [An error was reported en route using AI（Lungmask R321） of Lungsegmentation](https://discourse.slicer.org/t/an-error-was-reported-en-route-using-ai-lungmask-r321-of-lungsegmentation/28653)

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**Author:** [@zhenhua3](https://discourse.slicer.org/u/zhenhua3)\
**Replies:** 6\
**Last updated:** [March 29, 2023, 3:32pm UTC](https://discourse.slicer.org/t/an-error-was-reported-en-route-using-ai-lungmask-r321-of-lungsegmentation/28653 "2023-03-29T15:32:28Z")

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Dear development team of LungCTanalyzer or Dear Rudolf Bumm professor I have an error while using your AI program, can you please help me solve this problem？ This is my error record： @rbumm

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## [FEbio reading 0 elements for Segment Mesher vtk file](https://discourse.slicer.org/t/febio-reading-0-elements-for-segment-mesher-vtk-file/28600)

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**Author:** [@fea\_99](https://discourse.slicer.org/u/fea_99)\
**Replies:** 2\
**Last updated:** [March 29, 2023, 3:09pm UTC](https://discourse.slicer.org/t/febio-reading-0-elements-for-segment-mesher-vtk-file/28600 "2023-03-29T15:09:11Z")

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Apologies, this question may be better for the FEbio community, but I am currently awaiting approval to access their support forum. Essentially I created a mesh using segment mesher (cleaver) of a vertebrae. I then expo…

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## [Unable to use Total Segmentator in Slicer 5.2.2](https://discourse.slicer.org/t/unable-to-use-total-segmentator-in-slicer-5-2-2/28657)

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**Author:** [@KSL](https://discourse.slicer.org/u/KSL)\
**Replies:** 1\
**Last updated:** [March 29, 2023, 2:56pm UTC](https://discourse.slicer.org/t/unable-to-use-total-segmentator-in-slicer-5-2-2/28657 "2023-03-29T14:56:41Z")

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Hello dear Slicer users, I have just installed slicer 5.2.2 on my Windows 11 PC. I tried to access the Total Segmentator module. I also installed PyTorch and TorchIO extensions, respectively. However, I received a pop-u…

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## [Problem in interfacing 3d slicer and motive](https://discourse.slicer.org/t/problem-in-interfacing-3d-slicer-and-motive/28658)

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**Author:** [@darsana](https://discourse.slicer.org/u/darsana)\
**Replies:** 0\
**Last updated:** [March 29, 2023, 2:42pm UTC](https://discourse.slicer.org/t/problem-in-interfacing-3d-slicer-and-motive/28658 "2023-03-29T14:42:55Z")

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## [Export error data in model to model distance](https://discourse.slicer.org/t/export-error-data-in-model-to-model-distance/28644)

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**Author:** [@BARNEY](https://discourse.slicer.org/u/BARNEY)\
**Replies:** 0\
**Last updated:** [March 29, 2023, 8:29am UTC](https://discourse.slicer.org/t/export-error-data-in-model-to-model-distance/28644 "2023-03-29T08:29:28Z")

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Hello, slicer community, I am using the surface registration module to align the two models and make quantitative measurement of the difference by model to model distance,then show the color map by shape population view…

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## [How to export volume rendering from slicer to Hololens 2](https://discourse.slicer.org/t/how-to-export-volume-rendering-from-slicer-to-hololens-2/28592)

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**Author:** [@Caterina](https://discourse.slicer.org/u/Caterina)\
**Replies:** 3\
**Last updated:** [March 28, 2023, 7:06pm UTC](https://discourse.slicer.org/t/how-to-export-volume-rendering-from-slicer-to-hololens-2/28592 "2023-03-28T19:06:30Z")

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Good morning, I need to export volume rendering from 3d slicer in a format that is compatible with Hololens 2 (stl or obj). For example, in the screenshot in attach, I can visualize the segmentation (trachea) and the v…

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## [Share Your Feedback on Kitware's Training Courses](https://discourse.slicer.org/t/share-your-feedback-on-kitwares-training-courses/28637)

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**Author:** [@jcfr](https://discourse.slicer.org/u/jcfr)\
**Replies:** 0\
**Last updated:** [March 28, 2023, 6:51pm UTC](https://discourse.slicer.org/t/share-your-feedback-on-kitwares-training-courses/28637 "2023-03-28T18:51:40Z")

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Kitware, a software company specializing in open-source software, is seeking input about its paid public training courses. Our goal is to offer the highest quality, most relevant training material to help users and devel…

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## [A plane that won't go away](https://discourse.slicer.org/t/a-plane-that-wont-go-away/28625)

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**Author:** [@mohammed\_alshakhas](https://discourse.slicer.org/u/mohammed_alshakhas)\
**Replies:** 5\
**Last updated:** [March 28, 2023, 5:18pm UTC](https://discourse.slicer.org/t/a-plane-that-wont-go-away/28625 "2023-03-28T17:18:12Z")

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im doing usual segmentation workflow with two studies. however, I ended up with a plane that won’t go away. i didn’t create any plane. I only used toggle slice on and off as I usually do I tried hiding all volumes and…

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## [How to display	a centered airway by airwayinspector?](https://discourse.slicer.org/t/how-to-display-a-centered-airway-by-airwayinspector/28628)

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**Author:** [@q361532004](https://discourse.slicer.org/u/q361532004)\
**Replies:** 0\
**Last updated:** [March 28, 2023, 3:06pm UTC](https://discourse.slicer.org/t/how-to-display-a-centered-airway-by-airwayinspector/28628 "2023-03-28T15:06:36Z")

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I wanted to get the parameters of the airway, but when I analyzed it, I found that the airway shown in this picture could not be fully displayed, and I could not see the airway accurately delineated. How can I achi…

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## [Scalar Volume Load Error](https://discourse.slicer.org/t/scalar-volume-load-error/28565)

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**Author:** [@addisongepfert](https://discourse.slicer.org/u/addisongepfert)\
**Replies:** 2\
**Last updated:** [March 28, 2023, 2:20pm UTC](https://discourse.slicer.org/t/scalar-volume-load-error/28565 "2023-03-28T14:20:07Z")

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I am trying to upload DICOM files to slicer to convert them to an NRRD and STL. I am able to import the files into the DICOM Database but receive an error “Could not load: 3036: Linear Attenuation \[1-cm\] (3036) as a Scal…

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## [More sophisticated dental/cranio-maxillofacial CBCT segmentation methods](https://discourse.slicer.org/t/more-sophisticated-dental-cranio-maxillofacial-cbct-segmentation-methods/28621)

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**Author:** [@Fatih\_Hamircu](https://discourse.slicer.org/u/Fatih_Hamircu)\
**Replies:** 1\
**Last updated:** [March 28, 2023, 2:05pm UTC](https://discourse.slicer.org/t/more-sophisticated-dental-cranio-maxillofacial-cbct-segmentation-methods/28621 "2023-03-28T14:05:37Z")

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Hi dear, Do we (3D Slicer) have more advanced segmentation for mandibula or maxilla extraction from CBCT scan? they are namely; Snakes or active contours Live wire segmentation Statistical shape models Level set segme…

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## [Shortcuts on mac os](https://discourse.slicer.org/t/shortcuts-on-mac-os/28094)

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**Author:** [@mohammed\_alshakhas](https://discourse.slicer.org/u/mohammed_alshakhas)\
**Replies:** 10\
**Last updated:** [March 28, 2023, 1:41pm UTC](https://discourse.slicer.org/t/shortcuts-on-mac-os/28094 "2023-03-28T13:41:25Z")

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i noticed over a long time that shortcuts occasionally stop working then return again. other times it doesn’t work again until I restart slicer this happens occasionally over many versions of slicer

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## [create model from 360 scan?](https://discourse.slicer.org/t/create-model-from-360-scan/28601)

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**Author:** [@studyskin](https://discourse.slicer.org/u/studyskin)\
**Replies:** 3\
**Last updated:** [March 28, 2023, 8:04am UTC](https://discourse.slicer.org/t/create-model-from-360-scan/28601 "2023-03-28T08:04:38Z")

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hi, i downloaded this scan from morphosource but it is taken in 360 not usual slices but was called a ct scan, i dont imagine there is but is there a way to turn this into a model? thank you https://drive.google.com/dri…

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## [DCM2NIIX crash with MorphoSource data](https://discourse.slicer.org/t/dcm2niix-crash-with-morphosource-data/28607)

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**Author:** [@muratmaga](https://discourse.slicer.org/u/muratmaga)\
**Replies:** 4\
**Last updated:** [March 28, 2023, 4:52am UTC](https://discourse.slicer.org/t/dcm2niix-crash-with-morphosource-data/28607 "2023-03-28T04:52:15Z")

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There is an ill-formed dicom at MorphoSource that I am trying to import into Slicer for a tutorial. https://www.morphosource.org/concern/media/000004391?locale=en DicomPatcher didn’t finish in a reasonable amount of ti…

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## [STL sliced/rasterized to BMP/TIFF stack](https://discourse.slicer.org/t/stl-sliced-rasterized-to-bmp-tiff-stack/9351)

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**Author:** [@FLjosh](https://discourse.slicer.org/u/FLjosh)\
**Replies:** 30\
**Last updated:** [March 28, 2023, 3:26am UTC](https://discourse.slicer.org/t/stl-sliced-rasterized-to-bmp-tiff-stack/9351 "2023-03-28T03:26:02Z")

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Hi There, I want to import an STL file and slice at a layer height of 0.1mm and generate a folder of TIFF images corresponding to a each fully dense layer. Is this possible? I have seen many people here trying to do th…

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## [How to control the depth of visibility in volume rendering mode?](https://discourse.slicer.org/t/how-to-control-the-depth-of-visibility-in-volume-rendering-mode/28579)

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**Author:** [@neurosignal](https://discourse.slicer.org/u/neurosignal)\
**Replies:** 4\
**Last updated:** [March 28, 2023, 3:19am UTC](https://discourse.slicer.org/t/how-to-control-the-depth-of-visibility-in-volume-rendering-mode/28579 "2023-03-28T03:19:11Z")

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Dear team, I have two DICOM volumes, one for the head MRI and another with several binary spots or masks. Using the Volume rendering, when inspecting the overlay on a slice using the ROI’s control points, very deep spot…

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## [3D print pelvis while preserving fractures](https://discourse.slicer.org/t/3d-print-pelvis-while-preserving-fractures/28554)

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**Author:** [@usmanqadir91](https://discourse.slicer.org/u/usmanqadir91)\
**Replies:** 1\
**Last updated:** [March 27, 2023, 6:27pm UTC](https://discourse.slicer.org/t/3d-print-pelvis-while-preserving-fractures/28554 "2023-03-27T18:27:03Z")

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Hi I am working on one of the projects in which I have 3D scan of a fractured pelvis. I intend to process the model in a way to preserve actual fractures, while at the the same ensuring the smoothing of the rest of the …

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## [Adaptive zoom for segmentation at high magnification](https://discourse.slicer.org/t/adaptive-zoom-for-segmentation-at-high-magnification/28524)

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**Author:** [@mohammed\_alshakhas](https://discourse.slicer.org/u/mohammed_alshakhas)\
**Replies:** 5\
**Last updated:** [March 27, 2023, 6:11pm UTC](https://discourse.slicer.org/t/adaptive-zoom-for-segmentation-at-high-magnification/28524 "2023-03-27T18:11:52Z")

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It just occurred to me during segmentation wish to have an option that views readjust to center around the cursor example for use: during segmenting at high magnification, and instead of needing to readjust view each t…

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## [files formats for GPA](https://discourse.slicer.org/t/files-formats-for-gpa/28578)

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**Author:** [@Norbert1](https://discourse.slicer.org/u/Norbert1)\
**Replies:** 2\
**Last updated:** [March 27, 2023, 5:36pm UTC](https://discourse.slicer.org/t/files-formats-for-gpa/28578 "2023-03-27T17:36:10Z")

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As a retired physician, I am involved in maritime ethnography. One of my projects involves comparing the hull shapes of traditional Arab ships. For this I would like to perform a GPA using the Slicer Morph app. However,…

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## [Slicer view resets on visibility change of nodes](https://discourse.slicer.org/t/slicer-view-resets-on-visibility-change-of-nodes/28591)

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**Author:** [@S\_Arbabi](https://discourse.slicer.org/u/S_Arbabi)\
**Replies:** 1\
**Last updated:** [March 27, 2023, 3:38pm UTC](https://discourse.slicer.org/t/slicer-view-resets-on-visibility-change-of-nodes/28591 "2023-03-27T15:38:32Z")

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Hi, I’m viewing a segmentation label on three MRI sequences. The volumes are registered, so I believe I should be able to switch between volumes and check the same slice of segmentation on three of the volumes easily, b…

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## [Hanging protocol for displaying PET/CT images](https://discourse.slicer.org/t/hanging-protocol-for-displaying-pet-ct-images/28598)

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**Author:** [@nick.reynders](https://discourse.slicer.org/u/nick.reynders)\
**Replies:** 1\
**Last updated:** [March 27, 2023, 3:09pm UTC](https://discourse.slicer.org/t/hanging-protocol-for-displaying-pet-ct-images/28598 "2023-03-27T15:09:11Z")

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Is is possible to add on a feature that saves a user’s preferred modality-specific viewing settings. I view PET/CT images regularly and it would be great to be able to have my view settings saved so I’m always viewing P…

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## [slice spacing in fluoroscopic angiography](https://discourse.slicer.org/t/slice-spacing-in-fluoroscopic-angiography/28184)

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**Author:** [@pwaver](https://discourse.slicer.org/u/pwaver)\
**Replies:** 6\
**Last updated:** [March 27, 2023, 12:51pm UTC](https://discourse.slicer.org/t/slice-spacing-in-fluoroscopic-angiography/28184 "2023-03-27T12:51:30Z")

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Operating system: Ubuntu 22.04.2 LTS Slicer version:5.2.2 Expected behavior: There is an image spacing warning on DICOM load of a fluoroscopic angiogram. Expect an edit of image spacing in the Volumes module to be sust…

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## [Subdural electrodes](https://discourse.slicer.org/t/subdural-electrodes/28521)

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**Author:** [@mubafz](https://discourse.slicer.org/u/mubafz)\
**Replies:** 4\
**Last updated:** [March 27, 2023, 7:03am UTC](https://discourse.slicer.org/t/subdural-electrodes/28521 "2023-03-27T07:03:24Z")

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Hi Slicer team, Is there anyway the metal contacts of electrode of the ad-tech subdural grid (intracranial EEG) can be automatically labelled on CT as markup points which I can later rename. I have got 156 which will be…

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## [Segmentation of facial nerve](https://discourse.slicer.org/t/segmentation-of-facial-nerve/17466)

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**Author:** [@Balkis\_elkhouni](https://discourse.slicer.org/u/Balkis_elkhouni)\
**Replies:** 22\
**Last updated:** [March 27, 2023, 3:09am UTC](https://discourse.slicer.org/t/segmentation-of-facial-nerve/17466 "2023-03-27T03:09:26Z")

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Hello I’m not familiar with this segmentation tool and I’m trying to perform an extra cranial facial nerve segmentation on MRI 3D T2W sequences. Can some one help me with the steps to follow to obtain a linear segmentat…

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## [Can 3DSlicer be used to combine another CAD model with bone?](https://discourse.slicer.org/t/can-3dslicer-be-used-to-combine-another-cad-model-with-bone/28585)

<div class="topic-metadata">

**Author:** [@fea\_99](https://discourse.slicer.org/u/fea_99)\
**Replies:** 6\
**Last updated:** [March 27, 2023, 1:48am UTC](https://discourse.slicer.org/t/can-3dslicer-be-used-to-combine-another-cad-model-with-bone/28585 "2023-03-27T01:48:09Z")

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I need to perform a finite element analysis of pedicle screw pull out. I plan on using segment mesher to mesh the 3D model from the segmentation in 3DSlicer, and then map the material properties onto the vertebra (from o…

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## [Applying N4 bias field correction on TCIA breast DCE-MRI images](https://discourse.slicer.org/t/applying-n4-bias-field-correction-on-tcia-breast-dce-mri-images/28575)

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**Author:** [@LIE\_CAI](https://discourse.slicer.org/u/LIE_CAI)\
**Replies:** 1\
**Last updated:** [March 26, 2023, 4:14am UTC](https://discourse.slicer.org/t/applying-n4-bias-field-correction-on-tcia-breast-dce-mri-images/28575 "2023-03-26T04:14:47Z")

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Hi everyone, I’m trying to do the N4 correction from open-source breast cancer MRI images: Single site breast DCE-MRI data and segmentations from patients undergoing neoadjuvant chemotherapy (Breast-MRI-NACT-Pilot) - Th…

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