Hi all, I am looking to automate the vmtkcenterlines function in order to be able to run it on a server. It seems that my option is to have open profiles and use seed selector. This causes an issue because I need the entire processing to be automated, to open the profiles I would need to utilize som…

You can have a look how it got fully automated in 3D Slicer’s Extract Centerline module. See source code here .

[image] Charlie_Hayward: Hi all, I am looking to automate the vmtkcenterlines function in order to be able to run it on a server. It seems that my option is to have open profiles and use seed selector. This causes an issue because I need the entire processing to be automated, to open the profile…

[image] Thretent: Yes, this is possible without manual GUI interaction Please post such an automation workflow here, with examples and code. Over the years, I could not achieve this, so I’m eager to learn from yours.

Automatation of Centerline

Community VMTK

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Automatation of Centerline

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