# Brain Modelling

**URL:** <https://discourse.slicer.org/t/brain-modelling/46154>\
**Category:** Support\
**Tags:** segmentation, brain\
**Created:** [February 14, 2026, 4:24am UTC](https://discourse.slicer.org/t/brain-modelling/46154 "2026-02-14T04:24:08Z")\
**Posts on this page:** 3\
**Page:** 1

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**Author:** ![nakcali](https://avatars.discourse-cdn.com/v4/letter/n/ee59a6/32.png) [@nakcali](https://discourse.slicer.org/u/nakcali)\
**Post date:** [February 14, 2026, 4:24am UTC](https://discourse.slicer.org/t/brain-modelling/46154/1 "2026-02-14T04:24:08Z")

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Hello,

Can someone help me?

I am trying to create a 3D model of my brain. I am using Swiss Skull Stripper, but I am not able to do it properly. It looks like lego brain. My MRI data seem to be divided into several groups (for example: right side, left side, front side, etc.).

 ![Ekran görüntüsü 2026-01-20 123545](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/5/1/516ad206e42181a0f8b72125c687ff9e67d28b69.jpeg)

 ![Ekran görüntüsü 2026-01-20 123528](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/d/d/dd94b5babf5c12e91b4f18b17b5f087101c4f46f.jpeg)

 ![Ekran görüntüsü 2026-01-20 123515](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/e/3/e3d511050efcb70c49dd95d57b1197f79aa39a18.jpeg)

 ![Ekran görüntüsü 2026-01-20 122516](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/a/d/addadd484f909ac39f7ed93935d2bfbaf08182ae.jpeg)

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**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [February 14, 2026, 4:55am UTC](https://discourse.slicer.org/t/brain-modelling/46154/2 "2026-02-14T04:55:01Z")

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This is a very common issue with no easy solution. You can find here a couple of links to related discussions:

> [@Merge 3 MRI volumes with different orientations into one](https://discourse.slicer.org/t/merge-3-mri-volumes-with-different-orientations-into-one/27089):
>
> Hi, I’m working on MRI to segment cheek fat volume and often I have one serie of few images for axial axe, one serie for coronal axe, one serie for sagittal axe (for one patient, one IRM). To get a better volume segmentation I would like to stitch these series. Stitch volume module can help me to match differents axes or it is for differents series of the same axe? Sorry for my English slight_smile

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**Author:** ![pieper](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/pieper/32/8_2.png) [@pieper](https://discourse.slicer.org/u/pieper)\
**Post date:** [February 14, 2026, 3:36pm UTC](https://discourse.slicer.org/t/brain-modelling/46154/3 "2026-02-14T15:36:52Z")

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I suggest you try [SuperSynth](https://surfer.nmr.mgh.harvard.edu/fswiki/SuperSynth).