Build error on MacOSX, When install simpleITK, ModuleNotFoundError: No module named 'skbuild' occur

lassoan · September 18, 2021, 12:28am

It seems that you have run into this issue (SimeITK finds system Python instead of Slicer’s):

Slicer build error with VTK9 in debug mode due to SimpleITK Python configuration problem

opened 04:01PM - 01 Mar 21 UTC

type:bug domain:vtk9

When building latest master version on Windows, using Visual Studio, in debug mo…de, then build fails with this error: ``` -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Error at C:/Program Files/CMake/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter) (found suitable version "3.7", minimum required is "3.6") Call Stack (most recent call first): C:/Program Files/CMake/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) C:/D/S4D/VTK-build/lib/cmake/vtk-9.0/patches/3.18/FindPython/Support.cmake:2578 (find_package_handle_standard_args) C:/D/S4D/VTK-build/lib/cmake/vtk-9.0/patches/3.18/FindPython3.cmake:348 (include) C:/D/S4D/VTK-build/lib/cmake/vtk-9.0/VTK-vtk-module-find-packages.cmake:303 (find_package) C:/D/S4D/VTK-build/lib/cmake/vtk-9.0/vtk-config.cmake:138 (include) C:/D/S4D/VTK-build/vtk-config.cmake:1 (include) C:/D/S4D/ITK-build/lib/cmake/ITK-5.1/Modules/ITKVtkGlue.cmake:30 (find_package) C:/D/S4D/ITK/CMake/ITKModuleAPI.cmake:76 (include) C:/D/S4D/ITK/CMake/ITKModuleAPI.cmake:31 (itk_module_load) C:/D/S4D/ITK/CMake/ITKModuleAPI.cmake:129 (_itk_module_config_recurse) C:/D/S4D/ITK-build/ITKConfig.cmake:77 (itk_module_config) SuperBuild.cmake:386 (find_package) CMakeLists.txt:38 (include) -- Configuring incomplete, errors occurred! See also "C:/D/S4D/SimpleITK-build/CMakeFiles/CMakeOutput.log". See also "C:/D/S4D/SimpleITK-build/CMakeFiles/CMakeError.log". C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\MSBuild\Microsoft\VC\v160\Microsoft.CppCommon.targets(238 ,5): error MSB8066: Custom build for 'C:\D\S4D\CMakeFiles\76a3bb6e84cfb300f8ba64bbde6291e1\SimpleITK-mkdir.rule;C:\D\S4 D\CMakeFiles\76a3bb6e84cfb300f8ba64bbde6291e1\SimpleITK-download.rule;C:\D\S4D\CMakeFiles\76a3bb6e84cfb300f8ba64bbde629 1e1\SimpleITK-update.rule;C:\D\S4D\CMakeFiles\76a3bb6e84cfb300f8ba64bbde6291e1\SimpleITK-patch.rule;C:\D\S4D\CMakeFiles \76a3bb6e84cfb300f8ba64bbde6291e1\SimpleITK-configure.rule;C:\D\S4D\CMakeFiles\76a3bb6e84cfb300f8ba64bbde6291e1\SimpleI TK-build.rule;C:\D\S4D\CMakeFiles\76a3bb6e84cfb300f8ba64bbde6291e1\SimpleITK-install.rule;C:\D\S4D\CMakeFiles\55773c0e5 810be009a8f38bd18c05739\SimpleITK-complete.rule;C:\D\S4D\CMakeFiles\f5993a3ec64cf58c5707908b20f354e5\SimpleITK.rule;C:\ D\S4\CMakeLists.txt' exited with code 1. [C:\D\S4D\SimpleITK.vcxproj] ``` I don't know if it is related, but SimpleITK CMake cache (c:\D\S4D\SimpleITK-build\CMakeCache.txt) picks up pieces of anaconda, which is strange because my environment variables are clean (there is absolutely no mention of anaconda or python in any of the variables): ``` //Path to a program. _Python3_CONFIG:INTERNAL=_Python3_CONFIG-NOTFOUND _Python3_DEVELOPMENT_EMBED_SIGNATURE:INTERNAL=0993e8f7af6d2f88f03f3f71fd289925 _Python3_DEVELOPMENT_MODULE_SIGNATURE:INTERNAL=0993e8f7af6d2f88f03f3f71fd289925 //Path to a program. _Python3_EXECUTABLE:INTERNAL=_Python3_EXECUTABLE-NOTFOUND //Path to a file. _Python3_INCLUDE_DIR:INTERNAL=C:/Users/andra/anaconda3/include //Path to a library. _Python3_LIBRARY_DEBUG:INTERNAL=_Python3_LIBRARY_DEBUG-NOTFOUND //Path to a library. _Python3_LIBRARY_RELEASE:INTERNAL=C:/Users/andra/anaconda3/libs/python37.lib //Path to a library. _Python3_RUNTIME_LIBRARY_RELEASE:INTERNAL=C:/Users/andra/anaconda3/python37.dll //Result of TRY_COMPILE project_compiles:INTERNAL=FALSE ``` You can find the full logs here: https://1drv.ms/u/s!Arm_AFxB9yqHxaN2aILYudYPjN5xdA?e=Fhpgcf

Please check in the issue tracker if there is an easy workaround.

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Build error on MacOSX, When install simpleITK, ModuleNotFoundError: No module named 'skbuild' occur

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