Hi all,
I am now doing quantitative evaluation of registration and I plan to use three categories of metrics.
- Segment comparison: Hausdorff distance and Dice similarity coefficient
- Deformation vector field: Jacobian determinant
- Anatomical landmarks: Target registration error
I could’t find where to calculate TRE. I wonder if the Fiducial registration wizard module is similar to the TRE calculation.
Besides, is the Jacobian calculated within “RegistrationQA” module (Sorry but I couldn’t find it)? And the module can’t be installed using the latest Slicer preview version? (The log is shown below)
Hope for some suggestions. Thanks.
Error Log
Traceback (most recent call last):
File “”, line 1, in
File “D:\Slicer 4.11.0-2019-08-13\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/Administrator/AppData/Roaming/NA-MIC/Extensions-28438/RegistrationQA/lib/Slicer-4.11/qt-scripted-modules/CreateRegistrationHierarchy.py”, line 294
except Exception, e:
^
SyntaxError: invalid syntax
loadSourceAsModule - Failed to load file “C:/Users/Administrator/AppData/Roaming/NA-MIC/Extensions-28438/RegistrationQA/lib/Slicer-4.11/qt-scripted-modules/CreateRegistrationHierarchy.py” as module “CreateRegistrationHierarchy” !
Fail to instantiate module “CreateRegistrationHierarchy”
The following modules failed to be instantiated:
CreateRegistrationHierarchy
Crayon