Hi, As in the title, I can’t export my segmentation to binary labelmap in 4.11 Ubuntu. It works perfectly in Windows & Mac, not in Ubuntu. [2] Please help. Thanks in advance. Lukasz

Super. The problem was solved by reinstalling xinerama: sudo apt-get install --reinstall libxcb-xinerama0 Now latest 4.11 works, and export to binary works as well. Thank you! Best regards, Lukasz

[DEBUG][Qt] 22.10.2020 06:21:35 [] (unknown:0) - Session start time …: 2020-10-22 06:21:35 [DEBUG][Qt] 22.10.2020 06:21:35 [] (unknown:0) - Slicer version …: 4.11.0-2020-05-25 (revision 29077 / fb87a55) linux-amd64 - installed release [DEBUG][Qt] 22.10.2020 06:21:35 [] (unknown:0) - Operating syst…

[image] l.znaniecki: [ERROR][Python] 22.10.2020 06:21:51 [Python] (/home/dugi/.config/NA-MIC/Extensions-29077/SlicerHeart/lib/Slicer-4.11/qt-scripted-modules/DicomUltrasoundPlugin.py:134) - sopClassUID 1.2.840.10008.5.1.4.1.1.2 != supportedSOPClassUID 1.2.840.10008.5.1.4.1.1.3.1 [CRITICAL][Stre…

Please try with latest Slicer Stable Release and let us know if you run into any problems.

4.11 from 25.05 is the latest stable that works under Ubuntu. 4.11 from 5.10.2020 and 4.13 just don’t start.

Many people uses latest version of Slicer (4.11.20200930) on Ubuntu without any problems. What CPU, Graphics, and Ubuntu version do you have?

Ryzen 3900x, amd r5 230 gpu, ubuntu 20.4

Radeon R5 230 was launched in April 2014. Do you have this one? We try to balance between compatibility and performance/simplicity of our code base. As a result, we aim for keeping compatibility with hardware that is released in the past 5 years. Can you try with a newer card or at least latest driv…

Paraview runs OK, I just installed it, the program opens and windows respond. I have this R5 230 that you mention. Will update drivers and let you know. Regards, Lukasz

Updated AMD drivers to the latest version, didn’t help. Still can’t export segmentation to binary labelmap. Your help would be very much appreciated. Regards, Łukasz

ParaView uses similar Qt and VTK versions as Slicer, so it it probably just some trivial configuration option that causes you problems. What do you see when you start Slicer? Are any windows displayed? Do you see any error messages? Can you get a stack trace? Does Slicer start if you remove Slicer…

Can't export segmentation to binary labelmap in 4.11 Ubuntu 25.05.2020 version

Support

lassoan (Andras Lasso) October 22, 2020, 9:48pm 15

I just remember now that there is a problem with recent Qt versions on linux - this may solve your problem:

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Export binary mask of the segmentation as jpeg/png Support	2	882	April 18, 2024
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Can't export segmentation to binary labelmap in 4.11 Ubuntu 25.05.2020 version

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