Hi Andras, This looks promising! I just tried a general registration and got this: CalledProcessError: Command 'elastix' returned non-zero exit status 1 Also, I have a question: does one have to Create new ScriptedModule in the Parameter set button? @ihnorton I tried uploading the error log but…

@Fernando used a yesterday’s Slicer version that had still some issues. There should be no problem in the latest nightly version.

[image] Elastix registration toolbox is now available in Slicer I tried uploading the error log You can copy paste the relevant part of the log and a link to the full text of the log (on dropbox, onedrive, …)

[image] Elastix registration toolbox is now available in Slicer Also, I have a question: does one have to Create new ScriptedModule in the Parameter set button? Good point, the widget is there, but it is not used for anything now. I’ll add saving of node selections into the parameter node ( Sav…

I was trying to upload the .log file. [Trying from GMail now]

I see that it didn’t work. I’ll just send you the file by email. [image] Elastix registration toolbox is now available in Slicer [image] Elastix registration toolbox is now available in Slicer Also, I have a question: does one have to Create new ScriptedModule in the Parameter set button? G…

[image] Elastix registration toolbox is now available in Slicer I confess I have never been sure what a parameter node is. I tried the link in the wiki, but it’s dead. I’ve updated the link, the slides are available here: https://www.slicer.org/w/images/7/79/SlicerModulesProgrammingBeyondBasi…

Working fine now. Is there a way to choose the type of registration (rigid/affine, etc.) instead of having to choose a preset?

Type of registration (and many other parameters) are defined by the preset. It could be possible to add some level of preset editing/saving inside the module, but now it’s manual (editing text files; the presets folder can be opened from the Advanced section).

Elastix registration returns with failure

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Elastix registration returns with failure

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