Could someone please explain the difference between the export options for fixed landmarks (fiducials) and semiLM patches in 3D Slicer? I’m not familiar with the .mrk.json, .json, .fcsv, and *.fcsv formats or the advantage of using one over the other. I’m planning to import these files into R for GM…

Well as you discovered, that’s one reason not to use excel. In excel save your original fcsv in csv format using save as. Open the csv file in notepad (or a simple text editor) and paste these on top of the file (including the # sign) save and try opening in Slicer now. # Markups fiducial file v…

Export formats for markups

Support

jamesobutler (James Butler) March 15, 2022, 2:37pm 17

@rsookias See the following post below.

Topic		Replies	Views
Issue saving fiducials Support markups-fiducials , markups	2	479	February 24, 2022
MarkupsLine .fcsv loads as MarkupsFiducials Support markups	44	3227	September 11, 2020
Importing Landmarks from excel file into 3D Slicer Support markups-fiducials , file-import	9	2411	June 7, 2021
How to make proper landmark folder Support segmentation , markups-fiducials	19	1779	October 23, 2020
How to export all my JSON markup files into one table without running a GPA on it Support markups-fiducials	4	103	April 10, 2025

Export formats for markups

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