Hi I’m a newbie in 3D Slicer. I’d like to know how to export a multivolume from a module after importing it. I’m not sure about how cleared up is my question but I’ll be pleased about your help.

What file format would you like to export to? To a single file or to one volume per file?

I’d like to export in DICOM format and to one volume per file.

This cannot be done with Slicer.

[image] fedorov: This cannot be done with Slicer. It is very rare to find something that actually cannot be done in Slicer. The question is mostly about how easy it is to do it, and if it makes sense to do it in Slicer. Specifically, about how to exporting individual sequence items to DICOM …

@lassoan if I understood the question correctly, the user wants to export individual components of a multivolume, with individual components stored as a single DICOM file (quoting the user: “one volume per file”). In most cases, multivolume components are 3d volumes, which implies that the individu…

It’s true that export to multiframe format would be much more work. However, multiframe is still so rare and sparsely supported that I doubt that @ANDREY_FELIPE_ARANGO would actually need that format. @ANDREY_FELIPE_ARANGO could you describe your workflow? What do you plan to do with the exported D…

Hi again. Sorry, I didn’t have enough time to answer quickly. Generally, we are building a module where someone can import a volume file in order to be sliced into individual image files which will be stored with all the data. Then, when we want to export them again, all the individual image files …

What software will read the exported data?

No software. The exported data (volume) will be just in a folder in DICOM format. I attach the code that we have until now # -*- coding: cp1252 -*- ##import vtk, qt, ctk, slicer # from __future__ import print_function import sys, re, os, dicom from __main__ import vtk, qt, ctk, slicer try: NUM…

[image] ANDREY_FELIPE_ARANGO: No software. The exported data (volume) will be just in a folder in DICOM format. DICOM files can be created so many ways (especially 4D volumes), so it is very important to know what software do you plan to use them with. What software will read the data that yo…

Export multivolume 3D Slicer.

Support

lassoan (Andras Lasso) May 14, 2018, 3:25am 15

OK, then as I wrote above, you can follow the instructions described in this post: How to split 4D volumes to individual 3D volumes?

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Export multivolume 3D Slicer.

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