Extracting coordinates of muscle segmented on all slices from MRI scans

[mau_igna_06 (Mauro I. Dominguez)]

If you have only two coordinates you should use something like appears on this post

Center coordinates of volume slices?

Think I got it working (C++) by //---------------------------------------------------------------------- void GetBackgroundVolumeXYCenter(double slicePos[2]) { vtkMRMLSliceCompositeNode* compositeNode = nullptr; compositeNode = vtkMRMLSliceCompositeNode::SafeDownCast(this->GetSliceNode()->GetScene()->GetFirstNodeByClass("vtkMRMLSliceCompositeNode")); const char* backgroundVolumeID = compositeNode->GetBackgroundVolumeID(); double volumeBounds[6] = { 0.0 }; double volumeCente…

If you have 1 slice only you dhould add a 0 to the third coordinate