# HIPPOCOMPUS, WM. GM & CSF AUTO/SEMI AUTO SEGMENTATION

**URL:** <https://discourse.slicer.org/t/hippocompus-wm-gm-csf-auto-semi-auto-segmentation/26030>\
**Category:** Support\
**Tags:** segmentation\
**Created:** [November 2, 2022, 11:51am UTC](https://discourse.slicer.org/t/hippocompus-wm-gm-csf-auto-semi-auto-segmentation/26030 "2022-11-02T11:51:53Z")\
**Posts on this page:** 2\
**Page:** 1

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**Author:** ![D.Prasad](https://avatars.discourse-cdn.com/v4/letter/d/a88e57/32.png) [@D.Prasad](https://discourse.slicer.org/u/D.Prasad)\
**Post date:** [November 2, 2022, 11:51am UTC](https://discourse.slicer.org/t/hippocompus-wm-gm-csf-auto-semi-auto-segmentation/26030/1 "2022-11-02T11:51:53Z")

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Operating system: WINDOWS  
Slicer version: 5.  
0.3  
Expected behavior: na  
Actual behavior:na

HELLO EVERY ONE.

I WANT TO EXTRACT/SEGMENT HIPPOCOMPUS TISSUE, GRAY MATTER, WHITE MATTER AND CSF FROM THE BRAIN MRI IMAGE(SKULL STIPPED).

IS IT POSSIBLE TO DO AUTO/SEMI AUTO SEGMENTATION OF ABOVE TISSUE TYPES USING 3D SLICER. IF NOT ANY OTHER TECHNIQUE / METHOD, PLZ LET ME KNOW.

THANKS IN ADVANCE…

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**Author:** ![pieper](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/pieper/32/8_2.png) [@pieper](https://discourse.slicer.org/u/pieper)\
**Post date:** [November 2, 2022, 11:58pm UTC](https://discourse.slicer.org/t/hippocompus-wm-gm-csf-auto-semi-auto-segmentation/26030/2 "2022-11-02T23:58:09Z")

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We suggest using [SynthSeg](https://github.com/BBillot/SynthSeg) for this (outside of slicer, but the results can be read in easily).