# How to analysis fmri data?

**URL:** <https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553>\
**Category:** Support\
**Tags:** diffusion\
**Created:** [November 29, 2017, 6:24am UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553 "2017-11-29T06:24:39Z")\
**Posts on this page:** 7\
**Page:** 1

<div class="post-metadata">

**Author:** ![Jin](https://avatars.discourse-cdn.com/v4/letter/j/4af34b/32.png) [@Jin](https://discourse.slicer.org/u/Jin)\
**Post date:** [November 29, 2017, 6:24am UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/1 "2017-11-29T06:24:40Z")

</div>

Operating system:windows 10 enterprise  
Slicer version:4.8  
Expected behavior: analaysis fMRI datas  
Actual behavior:  
I got the fMRI datas from the GE 3.0T MR, I want to analysis the datas. But I dont kown how to do, and which extensions should I install, thanks very much!

---

<div class="post-metadata">

**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [November 29, 2017, 1:51pm UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/2 "2017-11-29T13:51:37Z")

</div>

What analysis would you like to do?

---

<div class="post-metadata">

**Author:** ![Jin](https://avatars.discourse-cdn.com/v4/letter/j/4af34b/32.png) [@Jin](https://discourse.slicer.org/u/Jin)\
**Post date:** [November 29, 2017, 4:04pm UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/3 "2017-11-29T16:04:19Z")

</div>

Thanks a lot, I want to rescontruct the speech function areas with different colors. I don’t know how to operat.

---

<div class="post-metadata">

**Author:** ![ihnorton](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/ihnorton/32/9_2.png) [@ihnorton](https://discourse.slicer.org/u/ihnorton)\
**Post date:** [November 29, 2017, 4:32pm UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/4 "2017-11-29T16:32:36Z")

</div>

I’m not aware of any fMRI analysis tools currently available in Slicer. I would suggest looking at SPM, AFNI, [nilearn](http://nilearn.github.io/), or one of the many other tools. (results could be visualized in Slicer, of course)

---

<div class="post-metadata">

**Author:** ![Jin](https://avatars.discourse-cdn.com/v4/letter/j/4af34b/32.png) [@Jin](https://discourse.slicer.org/u/Jin)\
**Post date:** [November 30, 2017, 2:22am UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/5 "2017-11-30T02:22:08Z")

</div>

Thank you! May I ask that which one of them is open source or free?

---

<div class="post-metadata">

**Author:** ![ihnorton](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/ihnorton/32/9_2.png) [@ihnorton](https://discourse.slicer.org/u/ihnorton)\
**Post date:** [November 30, 2017, 5:08am UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/6 "2017-11-30T05:08:04Z")

</div>

All of the ones I mentioned are open source under various licenses.

---

<div class="post-metadata">

**Author:** ![Harry-Muzart](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/harry-muzart/32/3877_2.png) [@Harry-Muzart](https://discourse.slicer.org/u/Harry-Muzart)\
**Post date:** [May 6, 2018, 1:42pm UTC](https://discourse.slicer.org/t/how-to-analysis-fmri-data/1553/7 "2018-05-06T13:42:28Z")

</div>

Thanks …