I would like to export results of TotalSegmentator into DICOM Segmentation format. I am using latest Slicer stable 5.2.1 on Mac. I loaded input CT series from DICOM Browser. I have QuantitativeReporting extension installed. However, segmentation results are not automatically placed properly in the …

Yes, it all works! Probably the reference volume was not set in the segmentation. I’ve tried to explain this in the message in the DICOM export dialog (see red text): [image] The solution is to specify segmentation geometry using the DICOM image as source: [image] I’ve now updated TotalSegmen…

How to export TotalSegmentator results as DICOM SEG?

Support

lassoan (Andras Lasso) Split this topic January 14, 2023, 4:20pm 4

2 posts were split to a new topic: Improve TotalSegmentator pre-segmentation speed

Topic		Replies	Views
Export segmentation as DICOM in latest stable slicer Support	11	353	June 7, 2023
Convert TotalSegmentator results to RT structure set Support segmentation , slicerrt	2	443	January 18, 2023
Save new segmentation from PET/CT images Support segmentation , dicom	4	771	October 11, 2019
Export TotalSegmentator results to DICOM Support segmentation , dicom	6	584	February 21, 2023
Saving segmentation as DICOM Support segmentation , dicom	7	2250	March 2, 2022

How to export TotalSegmentator results as DICOM SEG?

Related topics