Not sure what to make of this but, even if I simply close Slicer window (with no data loaded into it), I get this crash report from Mac. Otherwise application appears to be working correctly. ------------------------------------- Translated Report (Full Report Below) ------------------------------------- Process: Slicer [50196] Path: /Applications/Slicer.app/Contents/MacOS/Slicer Identifier: org.slicer.slicer Version: 5.2.1 (5.2.1) Code Type: X86-64 (Native) Parent Process: launchd [1] User ID: 1950572333 Date/Time: 2022-12-05 14:33:53.4615 -0800 OS Version: macOS 12.6.1 (21G217) Report Version: 12 Bridge OS Version: 7.0 (20P411) Anonymous UUID: 061333B8-0FD5-DBE2-ED53-7B373F48D0CE Time Awake Since Boot: 1100000 seconds System Integrity Protection: enabled Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: UNKNOWN_0xD at 0x0000000000000000 Exception Codes: 0x000000000000000d, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Termination Reason: Namespace SIGNAL, Code 11 Segmentation fault: 11 Terminating Process: exc handler [50196] VM Region Info: 0 is not in any region. Bytes before following region: 4306030592 REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL UNUSED SPACE AT START ---> __TEXT 100a8d000-100acf000 [ 264K] r-x/rwx SM=COW .../MacOS/Slicer Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libvtkIGSIOCodecs.dylib 0x1522fab75 vpx_codec_destroy + 37 1 libvtkIGSIOCodecs.dylib 0x1522f769d vtkVP9VolumeCodec::vtkInternal::~vtkInternal() + 29 2 libvtkIGSIOCodecs.dylib 0x1522f778e vtkVP9VolumeCodec::vtkInternal::~vtkInternal() + 14 3 libvtkIGSIOCodecs.dylib 0x1522f3b05 vtkVP9VolumeCodec::~vtkVP9VolumeCodec() + 37 4 libvtkCommon-9.1.1.dylib 0x11c95f6ee vtkSmartPointerBase::~vtkSmartPointerBase() + 30 5 libvtkAddon.dylib 0x10384dff8 vtkStreamingVolumeCodecFactory::~vtkStreamingVolumeCodecFactory() + 72 6 libvtkAddon.dylib 0x10384db4b vtkStreamingVolumeCodecFactoryInitialize::~vtkStreamingVolumeCodecFactoryInitialize() + 27 7 libsystem_c.dylib 0x7ff812224de4 __cxa_finalize_ranges + 409 8 libsystem_c.dylib 0x7ff812224bfe exit + 35 9 libdyld.dylib 0x7ff812338375 dyld4::LibSystemHelpers::exit(int) const + 11 10 dyld 0x104b30558 start + 504 Thread 1: 0 libsystem_pthread.dylib 0x7ff812327f48 start_wqthread + 0 Thread 2:: QNetworkAccessManager thread 0 libsystem_kernel.dylib 0x7ff8122f60aa poll + 10 1 QtCore 0x103cfe1c0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 608 2 QtCore 0x103cff9c1 QEventDispatcherUNIX::processEvents(QFlags ) + 849 3 QtCore 0x103c97a6f QEventLoop::exec(QFlags ) + 431 4 QtCore 0x103ac4553 QThread::exec() + 131 5 QtCore 0x103ac5569 0x103aa3000 + 140649 6 libsystem_pthread.dylib 0x7ff81232c4e1 _pthread_start + 125 7 libsystem_pthread.dylib 0x7ff812327f6b thread_start + 15 Thread 3:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x7ff8122ef97a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x7ff8122efce8 mach_msg + 56 2 CoreFoundation 0x7ff8123f336d __CFRunLoopServiceMachPort + 319 3 CoreFoundation 0x7ff8123f19f8 __CFRunLoopRun + 1276 4 CoreFoundation 0x7ff8123f0e3c CFRunLoopRunSpecific + 562 5 AppKit 0x7ff814f989ce _NSEventThread + 132 6 libsystem_pthread.dylib 0x7ff81232c4e1 _pthread_start + 125 7 libsystem_pthread.dylib 0x7ff812327f6b thread_start + 15 Thread 4:: AMCP Logging Spool 0 libsystem_kernel.dylib 0x7ff8122ef9b6 semaphore_wait_trap + 10 1 caulk 0x7ff81ae2c2e6 caulk::mach::semaphore::wait_or_error() + 16 2 caulk 0x7ff81ae14148 caulk::concurrent::details::worker_thread::run() + 36 3 caulk 0x7ff81ae13e0c void* caulk::thread_proxy > >(void*) + 41 4 libsystem_pthread.dylib 0x7ff81232c4e1 _pthread_start + 125 5 libsystem_pthread.dylib 0x7ff812327f6b thread_start + 15 Thread 5:: QFileInfoGatherer 0 libsystem_kernel.dylib 0x7ff8122f23ea __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff81232ca6f _pthread_cond_wait + 1249 2 QtCore 0x103acd6ab 0x103aa3000 + 173739 3 QtCore 0x103acd5ed QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 4 QtWidgets 0x1024bdc88 0x10227d000 + 2362504 5 QtCore 0x103ac5569 0x103aa3000 + 140649 6 libsystem_pthread.dylib 0x7ff81232c4e1 _pthread_start + 125 7 libsystem_pthread.dylib 0x7ff812327f6b thread_start + 15 Thread 6:: QFileInfoGatherer 0 libsystem_kernel.dylib 0x7ff8122f23ea __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff81232ca6f _pthread_cond_wait + 1249 2 QtCore 0x103acd6ab 0x103aa3000 + 173739 3 QtCore 0x103acd5ed QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 4 QtWidgets 0x1024bdc88 0x10227d000 + 2362504 5 QtCore 0x103ac5569 0x103aa3000 + 140649 6 libsystem_pthread.dylib 0x7ff81232c4e1 _pthread_start + 125 7 libsystem_pthread.dylib 0x7ff812327f6b thread_start + 15 Thread 7: 0 libsystem_pthread.dylib 0x7ff812327f48 start_wqthread + 0 Thread 8: 0 libsystem_pthread.dylib 0x7ff812327f48 start_wqthread + 0 Thread 9: 0 libsystem_pthread.dylib 0x7ff812327f48 start_wqthread + 0 Thread 10: 0 libsystem_pthread.dylib 0x7ff812327f48 start_wqthread + 0 Thread 11: 0 libsystem_pthread.dylib 0x7ff812327f48 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000001 rbx: 0x00007fad0691a1a0 rcx: 0x0070006d00690020 rdx: 0x0000000000000000 rdi: 0x0046007300650073 rsi: 0x0000000000000000 rbp: 0x00007ff7bf4728d0 rsp: 0x00007ff7bf4728c0 r8: 0x00007facf9829000 r9: 0x0000000000000016 r10: 0x00007ff853a7fee0 r11: 0x00000000000001ff r12: 0xfffffffffffffff0 r13: 0x00000000000002c0 r14: 0x00006000033b8690 r15: 0x0000600001207270 rip: 0x00000001522fab75 rfl: 0x0000000000010202 cr2: 0x000000010afbbbe0 Logical CPU: 0 Error Code: 0x00000000 Trap Number: 13 Thread 0 instruction stream: 66 66 2e 0f 1f 84 00 00-00 00 00 55 48 89 e5 48 ff.........UH..H 85 ff 74 1a 83 7f 10 00-74 18 48 8b 47 30 48 83 ..t.....t.H.G0H. c7 18 48 85 c0 48 0f 45-f8 48 8b 07 5d c3 31 c0 ..H..H.E.H..].1. 5d c3 31 c0 5d c3 0f 1f-44 00 00 55 48 89 e5 53 ].1.]...D..UH..S 50 48 89 fb 48 85 db 74-3d 48 8b 4b 08 b8 01 00 PH..H..t=H.K.... 00 00 48 85 c9 74 25 48-8b 7b 30 48 85 ff 74 1c ..H..t%H.{0H..t. [ff]51 20 48 c7 43 30 00-00 00 00 48 c7 43 08 00 .Q H.C0....H.C.. <== 00 00 00 48 c7 03 00 00-00 00 31 c0 89 43 10 48 ...H......1..C.H 83 c4 08 5b 5d c3 b8 08-00 00 00 48 83 c4 08 5b ...[]......H...[ 5d c3 66 0f 1f 84 00 00-00 00 00 55 48 89 e5 48 ].f........UH..H 85 ff 74 06 48 8b 47 10-5d c3 31 c0 5d c3 66 66 ..t.H.G.].1.].ff 66 66 2e 0f 1f 84 00 00-00 00 00 55 48 89 e5 53 ff.........UH..S Binary Images: 0x1522da000 - 0x152453fff libvtkIGSIOCodecs.dylib (*) /Applications/Slicer.app/Contents/Extensions-31317/SlicerIGSIO/lib/Slicer-5.2/libvtkIGSIOCodecs.dylib 0x11bff5000 - 0x11cb7efff libvtkCommon-9.1.1.dylib (*) /Applications/Slicer.app/Contents/lib/Slicer-5.2/libvtkCommon-9.1.1.dylib 0x1037e6000 - 0x103859fff libvtkAddon.dylib (*) /Applications/Slicer.app/Contents/lib/Slicer-5.2/libvtkAddon.dylib 0x7ff8121f6000 - 0x7ff81227efff libsystem_c.dylib (*) /usr/lib/system/libsystem_c.dylib 0x7ff812332000 - 0x7ff81233dfff libdyld.dylib (*) /usr/lib/system/libdyld.dylib 0x104b2b000 - 0x104b96fff dyld (*) /usr/lib/dyld 0x7ff812326000 - 0x7ff812331fff libsystem_pthread.dylib (*) /usr/lib/system/libsystem_pthread.dylib 0x7ff8122ee000 - 0x7ff812325fff libsystem_kernel.dylib (*) /usr/lib/system/libsystem_kernel.dylib 0x103aa3000 - 0x104013fff org.qt-project.QtCore (5.15) /Applications/Slicer.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore 0x7ff812373000 - 0x7ff812875fff com.apple.CoreFoundation (6.9) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x7ff814dec000 - 0x7ff815c7bfff com.apple.AppKit (6.9) /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit 0x7ff81ae12000 - 0x7ff81ae33fff com.apple.audio.caulk (1.0) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk 0x10227d000 - 0x1026c3fff org.qt-project.QtWidgets (5.15) /Applications/Slicer.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=2.1G resident=0K(0%) swapped_out_or_unallocated=2.1G(100%) Writable regions: Total=2.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.8G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 3840K 4 CG image 160K 13 ColorSync 224K 26 CoreAnimation 136K 9 CoreGraphics 12K 2 CoreUI image data 1592K 13 Foundation 16K 1 JS JIT generated code 128.0M 1 JS JIT generated code (reserved) 1.9G 1 reserved VM address space (unallocated) Kernel Alloc Once 8K 1 MALLOC 325.8M 116 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 128K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) ObjC additional data 15K 1 OpenGL GLSL 256K 3 STACK GUARD 56.0M 12 Stack 13.6M 12 VM_ALLOCATE 57.6M 255 VM_ALLOCATE (reserved) 44K 2 reserved VM address space (unallocated) WebKit Malloc 1184K 6 __CTF 756 1 __DATA 92.5M 1460 __DATA_CONST 32.3M 337 __DATA_DIRTY 1641K 212 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 812.6M 844 __TEXT 1.3G 1365 __UNICODE 592K 1 dyld private memory 6144K 3 mapped file 384.8M 74 shared memory 776K 18 =========== ======= ======= TOTAL 5.4G 4809 TOTAL, minus reserved VM space 3.2G 4809 ----------- Full Report ----------- {"app_name":"Slicer","timestamp":"2022-12-05 14:33:54.00 -0800","app_version":"5.2.1","slice_uuid":"0d378013-ad07-308c-a7b7-b5418f961ffa","build_version":"5.2.1","platform":1,"bundleID":"org.slicer.slicer","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.1 (21G217)","incident_id":"307EBFB2-9528-4131-B36E-D20CB4F0C9C2","name":"Slicer"} { "uptime" : 1100000, "procLaunch" : "2022-12-05 14:25:30.7761 -0800", "procRole" : "Foreground", "version" : 2, "userID" : 1950572333, "deployVersion" : 210, "modelCode" : "MacBookPro15,1", "procStartAbsTime" : 1134075343416785, "coalitionID" : 64051, "osVersion" : { "train" : "macOS 12.6.1", "build" : "21G217", "releaseType" : "User" }, "captureTime" : "2022-12-05 14:33:53.4615 -0800", "incident" : "307EBFB2-9528-4131-B36E-D20CB4F0C9C2", "bug_type" : "309", "pid" : 50196, "procExitAbsTime" : 1134578012199028, "cpuType" : "X86-64", "procName" : "Slicer", "procPath" : "\/Applications\/Slicer.app\/Contents\/MacOS\/Slicer", "bundleInfo" : {"CFBundleShortVersionString":"5.2.1","CFBundleVersion":"5.2.1","CFBundleIdentifier":"org.slicer.slicer"}, "storeInfo" : {"deviceIdentifierForVendor":"5711C463-2F32-5E5D-8265-6A5BDD3872BC","thirdParty":true}, "parentProc" : "launchd", "parentPid" : 1, "coalitionName" : "org.slicer.slicer", "crashReporterKey" : "061333B8-0FD5-DBE2-ED53-7B373F48D0CE", "bridgeVersion" : {"build":"20P411","train":"7.0"}, "sip" : "enabled", "vmRegionInfo" : "0 is not in any region. 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Looks like the same crash as this one: Slicer quit unexpectedly on MacBook with M1 chip - #3 by Young_Wang (in vpx_codec_destroy). Do you have the IGSIO extension installed? It provides libvtkIGSIOCodecs

I have installed the SlicerIGT, which I think automatically installs IGSIO.

yes, that’s probably it. @Sunderlandkyl, any suggestions?

Disposing of the VP9 codec seems to be causing the crash, I’ll look into it. Is this an issue that just started on Mac, or has IGSIO been causing a crash on close for a while?

[image] pieper: vpx_codec_destroy IGSIO/SlicerIGSIO/blob/b57a4200125e91a3e484f9471ec472ba7febad54/SuperBuild/External_VP9.cmake#L57-L64 "${EP_GIT_PROTOCOL}://github.com/webmproject/libvpx.git" QUIET ) ExternalProject_SetIfNotDefined( ${CMAKE_PROJECT_NAME}_${proj}_GIT_TAG "v1.8.2" QUIET I would assume an old VP9 is contributing. SlicerIGSIO is using 1.8.2, but version 1.10 is when Darwin 20, aka macOS 11, support was added. macOS 11 corresponded when the first Apple Silicon (M1) chips were released. Therefore I would assume this has been an issue with latest SlicerIGSIO for awhile on macOS and not necessarily due to the Slicer 5.2.1 release directly. 2021-03-09 v1.10.0 “Ruddy Duck” This maintenance release adds support for darwin20 and new codec controls, as well as numerous bug fixes. https://chromium.googlesource.com/webm/libvpx/+/master/CHANGELOG

Is this an M1 mac? Do you have Rosetta 2? @Sunderlandkyl it would be great if you could update VP9 to the latest version - hopefully the error goes away.

@Sunderlandkyl There appears to be an external VP9 project for SlicerIGSIO and also IGSIO. Probably want to update in both repositories. IGSIO/IGSIO/blob/master/SuperBuild/External_VP9.cmake set(proj "VP9") SET(${proj}_DEPENDENCIES) IF(VP9_DIR) FIND_PACKAGE(VP9 REQUIRED) SET(IGSIO_VP9_DIR ${VP9_DIR}) ELSE() SET(IGSIO_VP9_DIR "${CMAKE_BINARY_DIR}/VP9") # VP9 has not been built yet, so download and build it as an external project if(NOT CMAKE_SYSTEM_NAME STREQUAL "Windows") INCLUDE(${IGSIO_SOURCE_DIR}/SuperBuild/External_YASM.cmake) IF(NOT YASM_FOUND) LIST(APPEND ${proj}_DEPENDENCIES YASM) ENDIF() SET (VP9_INCLUDE_DIR "${CMAKE_BINARY_DIR}/VP9/vpx" CACHE PATH "VP9 source directory" FORCE) SET (VP9_LIBRARY_DIR "${CMAKE_BINARY_DIR}/VP9" CACHE PATH "VP9 library directory" FORCE) This file has been truncated. show original

[image] lassoan: Is this an M1 mac? If this is for me, this is an Intel Macbook pro from 2019

[image] Slicer quit unexpectedly on MacBook with M1 chip Development @pieper thanks. It seems to fix this issue. I deleted the setting file, and it fixed the crash during the launch for me. Hopefully it helps.

@muratmaga and @Young_Wang Using Slicer 5.2.1, can you try reinstalling SlicerIGSIO (or the other extensions that pull in SlicerIGSIO such as Slicer IGT) on your macOS machines and see if there is a crash on close? You could attempt checking for extension updates as well. Please report back here your results. @Sunderlandkyl pushed updates yesterday to use the latest versions of VP9 which supposedly have better support for macOS 11+. ENH: Update VP9 to 1.12.0 committed 11:55PM - 06 Dec 22 UTC (UTC) [Sunderlandkyl] Sunderlandkyl +3 -3 ENH: Update VP9 to 1.12.0 committed 11:59PM - 06 Dec 22 UTC (UTC) [Sunderlandkyl] Sunderlandkyl +6 -3

Mac Stable (5.2.1.) reports a crash everytime it is closed

Support

Young_Wang (Young Wang) December 7, 2022, 1:19pm 10

I deleted the setting file, and it fixed the crash during the launch for me. Hopefully it helps.

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Mac Stable (5.2.1.) reports a crash everytime it is closed

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