# Mapping brain lesions to standard connectome/tractography

**URL:** <https://discourse.slicer.org/t/mapping-brain-lesions-to-standard-connectome-tractography/11783>\
**Category:** Support\
**Created:** [May 29, 2020, 6:52pm UTC](https://discourse.slicer.org/t/mapping-brain-lesions-to-standard-connectome-tractography/11783 "2020-05-29T18:52:48Z")\
**Posts on this page:** 1\
**Page:** 1

<div class="post-metadata">

**Author:** ![MaxF](https://avatars.discourse-cdn.com/v4/letter/m/779978/32.png) [@MaxF](https://discourse.slicer.org/u/MaxF)\
**Post date:** [May 29, 2020, 6:52pm UTC](https://discourse.slicer.org/t/mapping-brain-lesions-to-standard-connectome-tractography/11783/1 "2020-05-29T18:52:48Z")

</div>

Hello everyone,

I am new to the slicer 3d and would like to map brain lesions (structural scans, T1, DWI, T2, dicom format) to visualize interactions with fibre tracts by coregistration with a standard connectome database/atlas (like HCP). As far as I understand, the workflow should be:

1. Coregister individual MRI data with MNI-standard space
2. Delineate lesions
3. Coregister with the connectome tracts.

Is this possible? If yes- would someone mind helping me navigate through the steps?

Many thanks,  
M