# New extension: MONAI Auto3DSeg - raise the bar in AI medical image segmentation

**URL:** <https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680>\
**Category:** Announcements\
**Tags:** feature, segmentation, segmentations, segment-editor, ai, monai, monailabel\
**Created:** [April 23, 2024, 2:21pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680 "2024-04-23T14:21:28Z")\
**Posts on this page:** 9\
**Page:** 2

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**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [July 8, 2024, 1:52pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/31 "2024-07-08T13:52:02Z")

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Split this topic on July 8, 2024, 1:52pm UTC

2 posts were split to a new topic: [Is MONAI Auto3DSeg Whole body segmentation model based on SegResNet?](https://discourse.slicer.org/t/is-monai-auto3dseg-whole-body-segmentation-model-based-on-segresnet/37255)

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**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [July 8, 2024, 1:50pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/33 "2024-07-08T13:50:38Z")

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Split this topic on July 8, 2024, 1:50pm UTC

5 posts were split to a new topic: [Are there automatic segmentation models for musculoskeletal anatomy?](https://discourse.slicer.org/t/are-there-automatic-segmentation-models-for-musculoskeletal-anatomy/37254)

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**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [July 12, 2024, 7:15pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/34 "2024-07-12T19:15:11Z")

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Split this topic on July 12, 2024, 7:15pm UTC

A post was split to a new topic: [AI segmentation models for head&neck and dental](https://discourse.slicer.org/t/ai-segmentation-models-for-head-neck-and-dental/37339)

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**Author:** ![Carlos\_Arrieta](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/carlos_arrieta/32/3267_2.png) [@Carlos\_Arrieta](https://discourse.slicer.org/u/Carlos_Arrieta)\
**Post date:** [March 1, 2025, 12:08am UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/35 "2025-03-01T00:08:23Z")

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Hi amazing module !!! is it possible to export a model after its colorized and lights where applied as a 3D object ?

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**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [March 1, 2025, 3:05am UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/36 "2025-03-01T03:05:27Z")

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Yes, just save the scene, everything is saved in standard/open file formats. What you may find challenging is not many software can render RGBA volumes and of course each software has its own lighting model and settings.

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**Author:** ![Chris\_Longros](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/chris_longros/32/80756_2.png) [@Chris\_Longros](https://discourse.slicer.org/u/Chris_Longros)\
**Post date:** [August 17, 2025, 6:20pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/37 "2025-08-17T18:20:09Z")

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Does this extension use the Pancreas CT DiNTS for pancreas segmentation? ([MONAI Model Zoo - Pre-trained Models for Medical Imaging](https://monai.io/model-zoo.html#/model/pancreas_ct_dints_segmentation))

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**Author:** ![Dr.Hunz](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/dr.hunz/32/81668_2.png) [@Dr.Hunz](https://discourse.slicer.org/u/Dr.Hunz)\
**Post date:** [December 20, 2025, 5:26pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/39 "2025-12-20T17:26:10Z")

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do we have for segmentate the tooth. Thankyou

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**Author:** ![maria\_m](https://avatars.discourse-cdn.com/v4/letter/m/35a633/32.png) [@maria\_m](https://discourse.slicer.org/u/maria_m)\
**Post date:** [March 3, 2026, 10:07am UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/40 "2026-03-03T10:07:29Z")

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Is there any additional documentation available? I am looking for information about pretrained models for brain tumor segmentation for my thesis. I recall reading somewhere that these models were either trained on the BraTS challenge datasets or were based on the winning architectures, but I can’t find the specific reference

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**Author:** ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)\
**Post date:** [March 3, 2026, 5:02pm UTC](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680/41 "2026-03-03T17:02:52Z")

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Information about each included model is available here: [SlicerMONAIAuto3DSeg/MONAIAuto3DSeg/Resources/Models.json at main · lassoan/SlicerMONAIAuto3DSeg · GitHub](https://github.com/lassoan/SlicerMONAIAuto3DSeg/blob/main/MONAIAuto3DSeg/Resources/Models.json)

If you need more details about a specific model then provide the model name and mention `@diazandr3s` (who managed the model trainings).

[Previous page](https://discourse.slicer.org/t/new-extension-monai-auto3dseg-raise-the-bar-in-ai-medical-image-segmentation/35680.md?page=1)