# Problem with running Slicer-4.9.0-2018-01-10-linux-amd64 in Fedora core 25

**URL:** <https://discourse.slicer.org/t/problem-with-running-slicer-4-9-0-2018-01-10-linux-amd64-in-fedora-core-25/2667>\
**Category:** Development\
**Created:** [April 23, 2018, 2:38pm UTC](https://discourse.slicer.org/t/problem-with-running-slicer-4-9-0-2018-01-10-linux-amd64-in-fedora-core-25/2667 "2018-04-23T14:38:01Z")\
**Posts on this page:** 1\
**Page:** 1

<div class="post-metadata">

**Author:** ![shahrokh](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/shahrokh/32/1499_2.png) [@shahrokh](https://discourse.slicer.org/u/shahrokh)\
**Post date:** [April 23, 2018, 2:38pm UTC](https://discourse.slicer.org/t/problem-with-running-slicer-4-9-0-2018-01-10-linux-amd64-in-fedora-core-25/2667/1 "2018-04-23T14:38:01Z")

</div>

Hello  
Dear Slicer Developers

I want to use Slicer-4.9.0-2018-01-10-linux-amd64 in Fedora core 25 with the following specifications:

```
[sn@localhost ~]$ uname --all
Linux localhost.localdomain 4.8.6-300.fc25.x86_64 #1 SMP Tue Nov 1 12:36:38 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
[sn@localhost ~]$ 

```

When I run Slicer, I get the following messages. Anyway, Slicer is run but “Suject Hierarchy” is not seen.

```auto
    [sn@localhost ~]$ Slicer 
    Number of registered modules: 182 
    Enabling C extensions
    ModuleDescriptionParser Error: <index> cannot be specified because a <longflag> and/or <flag> has been specified for this parameter." at line 19 while parsing <?xml version="1.0" encoding="utf-8"?>
    `<executable>`
      <category>Testing</category>
      <title>Eval Shape</title>
      <description><![CDATA[Evaluate shape group index with neural network.]]></description>
      <version>1.0.$Revision$</version>
      <documentation-url></documentation-url>
      <license>slicer4</license>
      <contributor>Priscille de Dumast (University of Michigan)</contributor>
      <acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
      <parameters>
        <label>IO</label>
        <description><![CDATA[Input/output parameters]]></description>
        <file fileExtensions=".zip">
          <name>inputZip</name>
          <label>Input Zip</label>
          <longflag>--inputZip</longflag>
          <channel>input</channel>
          <index>0</index>
          <description><![CDATA[Input zip]]></description>
        </file>
        <file fileExtensions=".zip">
          <name>outputZip</name>
          <label>Output Zip</label>
          <longflag>--outputZip</longflag>
          <channel>output</channel>
          <index>1</index>
          <description><![CDATA[Output zip]]></description>
        </file>
      </parameters>
    </executable>
    Failed to parse xml module description:
     "<?xml version="1.0" encoding="utf-8"?>
    <executable>
      <category>Testing</category>
      <title>Eval Shape</title>
      <description><![CDATA[Evaluate shape group index with neural network.]]></description>
      <version>1.0.$Revision$</version>
      <documentation-url></documentation-url>
      <license>slicer4</license>
      <contributor>Priscille de Dumast (University of Michigan)</contributor>
      <acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
      <parameters>
        <label>IO</label>
        <description><![CDATA[Input/output parameters]]></description>
        <file fileExtensions=".zip">
          <name>inputZip</name>
          <label>Input Zip</label>
          <longflag>--inputZip</longflag>
          <channel>input</channel>
          <index>0</index>
          <description><![CDATA[Input zip]]></description>
        </file>
        <file fileExtensions=".zip">
          <name>outputZip</name>
          <label>Output Zip</label>
          <longflag>--outputZip</longflag>
          <channel>output</channel>
          <index>1</index>
          <description><![CDATA[Output zip]]></description>
        </file>
      </parameters>
    </executable>" 
    ModuleDescriptionParser Error: <index> cannot be specified because a <longflag> and/or <flag> has been specified for this parameter." at line 19 while parsing <?xml version="1.0" encoding="utf-8"?>
    <executable>
      <category>Testing</category>
      <title>Train Neural Network</title>
      <description><![CDATA[Train a neural network.]]></description>
      <version>1.0.$Revision$</version>
      <documentation-url></documentation-url>
      <license>slicer4</license>
      <contributor>Priscille de Dumast (University of Michigan)</contributor>
      <acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
      <parameters>
        <label>IO</label>
        <description><![CDATA[Input/output parameters]]></description>
        <file fileExtensions=".zip">
          <name>inputZip</name>      
          <label>Input Zip</label>
          <longflag>--inputZip</longflag>
          <channel>input</channel>
          <index>0</index>
          <description><![CDATA[Input zip file]]></description>
        </file>
        <file fileExtensions=".zip">
          <name>outputZip</name>
          <label>Output Zip</label>
          <longflag>--outputZip</longflag>
          <channel>output</channel>
          <index>1</index>
          <description><![CDATA[Output zip]]></description>
        </file>
      </parameters>
    </executable>
    Failed to parse xml module description:
     "<?xml version="1.0" encoding="utf-8"?>
    <executable>
      <category>Testing</category>
      <title>Train Neural Network</title>
      <description><![CDATA[Train a neural network.]]></description>
      <version>1.0.$Revision$</version>
      <documentation-url></documentation-url>
      <license>slicer4</license>
      <contributor>Priscille de Dumast (University of Michigan)</contributor>
      <acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
      <parameters>
        <label>IO</label>
        <description><![CDATA[Input/output parameters]]></description>
        <file fileExtensions=".zip">
          <name>inputZip</name>      
          <label>Input Zip</label>
          <longflag>--inputZip</longflag>
          <channel>input</channel>
          <index>0</index>
          <description><![CDATA[Input zip file]]></description>
        </file>
        <file fileExtensions=".zip">
          <name>outputZip</name>
          <label>Output Zip</label>
          <longflag>--outputZip</longflag>
          <channel>output</channel>
          <index>1</index>
          <description><![CDATA[Output zip]]></description>
        </file>
      </parameters>
    </executable>" 
    Number of instantiated modules: 182 
    When loading module "ProstateMRIUSContourPropagation" , the dependency "DicomRtImportExport" failed to be loaded. 
    Number of loaded modules: 181 
    Switch to module: "Welcome" 
    Loaded volume from file: /home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group04.nii. Dimensions: 30x13x28. Number of components: 1. Pixel type: unsigned short.

    "Volume" Reader has successfully read the file "/home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group04.nii" "[0.15s]" 
    Loaded volume from file: /home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group05.nii. Dimensions: 31x15x17. Number of components: 1. Pixel type: unsigned short.

    "Volume" Reader has successfully read the file "/home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group05.nii" "[0.03s]" 
    Switch to module: "Data" 
    Switch to module: "Segmentations" 
    Switch to module: "" 
    Switch to module: "" 
    [sn@localhost ~]$ 

```

Please guide me.  
Thanks a lot.  
Shahrokh