# Removing skull using Extract Skeleton module takes a lot of time

**URL:** https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787
**Category:** Support
**Created:** [November 25, 2021, 1:39pm UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787 "2021-11-25T13:39:28Z")
**Posts on this page:** 6
**Page:** 1

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### Author: ![mahnaz\_khazaei](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/mahnaz_khazaei/32/13255_2.png) [@mahnaz\_khazaei](https://discourse.slicer.org/u/mahnaz_khazaei)
#### Post date: [November 25, 2021, 1:39pm UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787/1 "2021-11-25T13:39:28Z")

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hi. i am using 3dslicer software for removing the skull of head by using module Filtering\> Extract Skeleton, but iham the problem tha the program takes alot of time to running and i saw that it takes alot of time (may be about 10 hours), then i canceled t

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### Author: ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)
#### Post date: [November 26, 2021, 3:56am UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787/2 "2021-11-26T03:56:27Z")

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Extract Skeleton module is for extracting centerline from thin tubular-shaped structures.

You can remove the skull from MRI images using skull stripping modules, such as the [Swiss Skull Stripper](https://www.slicer.org/wiki/Documentation/Nightly/Modules/SwissSkullStripper).

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### Author: ![mahnaz\_khazaei](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/mahnaz_khazaei/32/13255_2.png) [@mahnaz\_khazaei](https://discourse.slicer.org/u/mahnaz_khazaei)
#### Post date: [November 28, 2021, 4:22pm UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787/3 "2021-11-28T16:22:22Z")

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thanks. but i dont find the documentation of this module and [3dslicer.org](http://3dslicer.org) doesn’t response never.

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### Author: ![pieper](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/pieper/32/8_2.png) [@pieper](https://discourse.slicer.org/u/pieper)
#### Post date: [November 28, 2021, 4:39pm UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787/4 "2021-11-28T16:39:59Z")

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The correct sites are slicer.org and [slicer.readthedocs.io](https://slicer.readthedocs.io/en/latest/user_guide/modules/extractskeleton.html).

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### Author: ![jamesobutler](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/jamesobutler/32/7511_2.png) [@jamesobutler](https://discourse.slicer.org/u/jamesobutler)
#### Post date: [November 28, 2021, 5:31pm UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787/5 "2021-11-28T17:31:40Z")

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Any reason the organization doesn’t own both [slicer.org](http://slicer.org) and [3dslicer.org](http://3dslicer.org)? Looks like [Slicer.org](http://Slicer.org) was created in 1999 and [3dslicer.org](http://3dslicer.org) was created just recently on 2021-11-09. Info obtained from [ICANN Lookup](https://lookup.icann.org/lookup).

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### Author: ![hherhold](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/hherhold/32/12199_2.png) [@hherhold](https://discourse.slicer.org/u/hherhold)
#### Post date: [November 28, 2021, 5:41pm UTC](https://discourse.slicer.org/t/removing-skull-using-extract-skeleton-module-takes-a-lot-of-time/20787/6 "2021-11-28T17:41:19Z")

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Good luck with [3dslicer.org](http://3dslicer.org). It’s parked by Transure Enterprise Ltd. They’ve got complaints against them ranging from Bank of America to BHP Billiton.
