Hello, I am interested in performing skull stripping and bias corrections for rodent data from a Bruker scanner. Since I have become comfortable with Slicer and working with DTI data in it, I was hoping that there might be some good tools in Slicer for these two additional steps. As well as a good …

SwissSkullStripper extension should work well for rodent skulls. You just need to provide a pair of rodent MRI and corresponding labelmap that contains only the brain in Atlas section of the module. You can create a brain labelmap by manually segmenting the brain using Segment editor module and then…

Rodent skull stripping

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Rodent skull stripping

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