I’ve installed Slicer on an Ubuntu cloud instance (AWS/GCP) and I want to run it with a self-made extension and no GUI… Is there documentation on the slicer site that I’m missing to be able to do this? I’ve found info about using Python to do things, but I want to essentially go: Slicer, do this tas…

Is docker an option for you? Here’s an example of a command line tool based on Slicer and this is another one . If you don’t use docker you would need a different way of having a desktop to access all of Slicer. If you don’t need graphics you might be able to get by with PythonSlicer and access ju…

I have dicom images I want to turn into OBJ models using an extension that’s already made. My idea was to use a form to upload the images to AWS/GCP and there have Slicer take them as input with the extension and then output the obj. The extension segments the file to create a 3D render. I’ve never…

If you don’t want to learn Javascript to create a frontend, then it is also an option to create a web application using Slicer Jupyter notebook and Voila . You can use standard IPython widgets for file upload/download/display. Voila takes care of selectively locking down the notebook, so users can s…

[image] lennymartinez: I want to essentially go: Slicer, do this task, using this folder, and put the output in this location From my recent experience on headless Slicer on Ubuntu, I think something like the following on the command line could be one way to go: xvfb-run -a /slicer_path/Slic…

Hi Lenny, this isn’t directly related to your question, but I am working on a similar project (DICOM -> OBJ). Is the extension that you are using something that is custom to your project or an open source extension. If its open source, would you mind sharing a link to it? Thanks, Jeff

Hi, I have been working on developing a web app as suggested by @lassoan following this link: [image] Run Slicer in your web browser - as a Jupyter notebook or as a full application Announcements It has been possible to use Slicer from Jupyter notebooks but the most recen…

Does everything work well (Slicer kernel starts without problems) if you don’t use Voila?

Thank you for your reply @lassoan . Yes, slicer works well. I just need to integrate it with Viola. I think I am missing something in the Docker file. I have tried slicer in my other repository. It works well. I am following your repository. Just the integration with viola is a bit difficult.

hi @lassoan . This is the example I have been following to generate my own repository and notebook. It works fine. The problem arises only when I try to run the app through Voila. [image] Slicer/SlicerNotebooks 7e61957c0b9ee180c49b9f2e86eec738b037dd82 Examples that illustrate how to u…

Running Slicer without GUI?

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lassoan (Andras Lasso) April 9, 2021, 1:23am 13

For reference, this has been discussed at the weekly developer meeting: 2021.04.06 Hangout - #3 by jcfr

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Running Slicer without GUI?

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