# Seeding basics for new user

**URL:** https://discourse.slicer.org/t/seeding-basics-for-new-user/13718
**Category:** Support
**Tags:** segmentation
**Created:** [September 27, 2020, 2:20pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718 "2020-09-27T14:20:54Z")
**Posts on this page:** 10
**Page:** 1

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### Author: ![jax200](https://avatars.discourse-cdn.com/v4/letter/j/5e9695/32.png) [@jax200](https://discourse.slicer.org/u/jax200)
#### Post date: [September 27, 2020, 2:20pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/1 "2020-09-27T14:20:54Z")

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When painting in Segment Editor for “Grow from Seeds”, I understand you paint inside with one layer and circle around with another layer in order to segment out a structure. Without any added specification, how does the program recognize a difference between the two? Also, how to remove a areas that are “over painted”? Sometimes the seeding doesn’t render accurately or with appropriate coverage despite good contrast, and get very ragged organs (eg, liver). How to improve?

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### Author: ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)
#### Post date: [September 27, 2020, 2:29pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/2 "2020-09-27T14:29:18Z")

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The algorithm grows each seed simultaneously. Growing is faster in uniform areas, so boundaries between segments usually end up where there is a big step in image intensity

If wrong segment is grown anywhere then just paint some more seeds there, with the correct segment. Since this usually happens in low-contrast regions, typically you need to paint with two colors, at both sides of hardly-visible boundaries.

For liver segmentation, I would recommend the fully automatic AI-based segmentation tool provided by [NVidia AIAA extension](https://github.com/NVIDIA/ai-assisted-annotation-client/tree/master/slicer-plugin#nvidia-ai-assisted-annotation-aiaa-for-3d-slicer).

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### Author: ![jax200](https://avatars.discourse-cdn.com/v4/letter/j/5e9695/32.png) [@jax200](https://discourse.slicer.org/u/jax200)
#### Post date: [September 29, 2020, 12:45pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/3 "2020-09-29T12:45:13Z")

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Thanks Andras. I now better understand how the two colors are used to enhance contrast differential.

The extension requires 4.11.0 but unfortunately it won’t install properly on my PC.

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### Author: ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)
#### Post date: [September 29, 2020, 1:56pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/4 "2020-09-29T13:56:49Z")

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Slicer-4.11 requires a PC not older than about 6-8 years. If your computer is a more recent one and Slicer does not run on it then let us know.

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### Author: ![jax200](https://avatars.discourse-cdn.com/v4/letter/j/5e9695/32.png) [@jax200](https://discourse.slicer.org/u/jax200)
#### Post date: [September 29, 2020, 2:05pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/5 "2020-09-29T14:05:17Z")

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My “PC” is about 5-6 yrs old, but I installed a new motherboard and memory 6 mos ago. The error messages are of the form "The procedure entry point … could not be located in the dynamic link library… "

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### Author: ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)
#### Post date: [September 29, 2020, 3:26pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/6 "2020-09-29T15:26:47Z")

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A post was split to a new topic: [Liver visualization in 3D](https://discourse.slicer.org/t/liver-visualization-in-3d/13747)

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### Author: ![lassoan](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lassoan/32/13_2.png) [@lassoan](https://discourse.slicer.org/u/lassoan)
#### Post date: [September 29, 2020, 3:27pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/7 "2020-09-29T15:27:11Z")

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What operating system do you use?  
Can you post the full error message?

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### Author: ![jamesobutler](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/jamesobutler/32/7511_2.png) [@jamesobutler](https://discourse.slicer.org/u/jamesobutler)
#### Post date: [September 29, 2020, 3:39pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/8 "2020-09-29T15:39:28Z")

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> [@jax200](#):
>
> The error messages are of the form "The procedure entry point … could not be located in the dynamic link library… "

Hi @jax200 this is a known issue with today’s Slicer Preview build (Slicer 4.11.0-2020-09-28) which you can follow updates for this issue at [Slicer 4.11.0-2020-09-28 does not start successfully · Issue #5208 · Slicer/Slicer · GitHub](https://github.com/Slicer/Slicer/issues/5208).

Instead you can download the previous Slicer Preview build for Windows at the following link:  
[http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&name=Slicer-4.11.0-2020-09-25-win-amd64.exe&checksum=5e26ad3bfdc54f3c95221a583acc655e](http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&name=Slicer-4.11.0-2020-09-25-win-amd64.exe&checksum=5e26ad3bfdc54f3c95221a583acc655e)

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### Author: ![jax200](https://avatars.discourse-cdn.com/v4/letter/j/5e9695/32.png) [@jax200](https://discourse.slicer.org/u/jax200)
#### Post date: [September 29, 2020, 4:44pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/9 "2020-09-29T16:44:51Z")

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Windows 10 x64

![error](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/a/0/a01665614eab6d3512096fdadb271ee35ed7aac4.jpeg)

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### Author: ![jax200](https://avatars.discourse-cdn.com/v4/letter/j/5e9695/32.png) [@jax200](https://discourse.slicer.org/u/jax200)
#### Post date: [September 30, 2020, 6:23pm UTC](https://discourse.slicer.org/t/seeding-basics-for-new-user/13718/10 "2020-09-30T18:23:19Z")

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Thanks Andras - this extension worked quite well for me and look forward to experimenting with it further.
