# SlicerPathology extension related

**URL:** <https://discourse.slicer.org/t/slicerpathology-extension-related/24650>\
**Category:** Support\
**Created:** [August 5, 2022, 7:57am UTC](https://discourse.slicer.org/t/slicerpathology-extension-related/24650 "2022-08-05T07:57:44Z")\
**Posts on this page:** 3\
**Page:** 1

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**Author:** ![labixin](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/labixin/32/1965_2.png) [@labixin](https://discourse.slicer.org/u/labixin)\
**Post date:** [August 5, 2022, 7:57am UTC](https://discourse.slicer.org/t/slicerpathology-extension-related/24650/1 "2022-08-05T07:57:44Z")

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Hi all,

I would like to use SlicerPathology to segment specific structures on pathological sections. Initially I have searched Extension Manager but found nothing. Then I have downloaded installation package from github and tried “Install Extension from File” but still failed again.

I have noticed the “issue” section ([github link](https://github.com/SBU-BMI/SlicerPathology/issues)) and wondered if this extension could be accessed now. Besides, I want to know how to install this extension.

Hope for some advice. Your help is highly appreciated.

Sincerely,

XinXie

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**Author:** ![gaoyi.cn](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/gaoyi.cn/32/1422_2.png) [@gaoyi.cn](https://discourse.slicer.org/u/gaoyi.cn)\
**Post date:** [August 5, 2022, 1:35pm UTC](https://discourse.slicer.org/t/slicerpathology-extension-related/24650/2 "2022-08-05T13:35:23Z")

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Hi,

Could I know what specific structure you want to segment? As I recall, the SlicerPathology previously only segments nucleus from HE images.

Best,

yi

 ![841F8A606C9E466C9FD5610F03B4BC6F.png](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/3/a/3a85400eb899b7201ef16816337be48a02539676.png)

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<div class="post-metadata">

**Author:** ![labixin](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/labixin/32/1965_2.png) [@labixin](https://discourse.slicer.org/u/labixin)\
**Post date:** [October 3, 2022, 3:11am UTC](https://discourse.slicer.org/t/slicerpathology-extension-related/24650/3 "2022-10-03T03:11:52Z")

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Thank you for reply.

I want to segment an biomarker cavity (manually placed inside body) from HE/IHC images.

I think maybe I could try it in slicer using “segmentation” module. Anyway I have made it in another software. Thank you very much again.

Sincerely  
Crayon