Hi Slicer developers, cc: @pieper @lassoan @jcfr @styner This week we plan to start a considerable effort to revamp the Surface Toolbox . The main idea is to port most of MeshMath’s functionality into it. We have created a lab’s page that details how we plan this effort to go. If anybody has ideas…

@benwilson is making good progress and should have a pull request shortly :tada: To move forward, considering we will be adding around ~20 CLIs, I was thinking to develop the SurfaceToolBox (and associated modules) in its own repository Slicer/Slicer-SurfaceToolBox that we would integrate in Slicer…

Sounds like a good idea to me - thanks @jcfr :+1:

Thanks for the feedback. Repository name changed to SlicerSurfaceToolbox LICENSE, README.md and top-level CMakeLists.txt added History filtered to have all modules at the root of the repo and to fix the the git message trailers so that both Co-authored-by and git-svn-id are recognized

Start with r28434 , SurfaceToolbox is now integrated as a remote module whose sources are downloaded from https://github.com/Slicer/SlicerSurfaceToolbox

Hi! I was considering expanding the Connectivity option of the surface toolbox such, that not only the largest region is extracted, but to base the extraction on a volumetric threshold (I remember seeing a comment in the Python source code of the module in 4.10.2 regarding this). So I tried (in Pyt…

For segmentation problems like this, we normally use the Segment Editor: Use Threshold effect to specify intensity range you are interested in. Use Islands effect / Keep largest island method to keep the largest connected component. You can continue with further processing or export directly to S…

Surface toolbox revamp

Development

Topic		Replies	Views
Surface toolbox - Extract largest component Support segmentation	6	726	June 7, 2023
Extract surface of a volumetric region of interest Radiomics	1	426	October 10, 2023
Volume rendering shows a solid box Support	16	2576	October 27, 2018
Use segmentations in CAD or FEM software Support segmentation	58	9653	May 8, 2025
Surface editor and labeling Development segmentation	2	776	March 19, 2020

Surface toolbox revamp

Related topics