# Texture analysis on an image with cysts taken out

**URL:** <https://discourse.slicer.org/t/texture-analysis-on-an-image-with-cysts-taken-out/15098>\
**Category:** Radiomics\
**Created:** [December 16, 2020, 4:13pm UTC](https://discourse.slicer.org/t/texture-analysis-on-an-image-with-cysts-taken-out/15098 "2020-12-16T16:13:24Z")\
**Posts on this page:** 3\
**Page:** 1

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**Author:** ![lekremer](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/lekremer/32/9145_2.png) [@lekremer](https://discourse.slicer.org/u/lekremer)\
**Post date:** [December 16, 2020, 4:13pm UTC](https://discourse.slicer.org/t/texture-analysis-on-an-image-with-cysts-taken-out/15098/1 "2020-12-16T16:13:24Z")

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Hello,

I am looking at texture within a kidney, but removing all cysts to look only at healthy tissue. I was wondering how this would affect GLCM and other features, because there will now be pixels of 0 value within the ROI. I put this final image into pyradiomics to compute features, but I do not want to include the 0th pixels in the computation.

![20000599Left Kidney919](https://us1.discourse-cdn.com/flex002/uploads/slicer/original/3X/a/d/ad6a9a561e341c7f24c28fc4e1b676741e0ee8fe.png)

Thank you!

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**Author:** ![JoostJM](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/joostjm/32/1091_2.png) [@JoostJM](https://discourse.slicer.org/u/JoostJM)\
**Post date:** [December 17, 2020, 12:49pm UTC](https://discourse.slicer.org/t/texture-analysis-on-an-image-with-cysts-taken-out/15098/2 "2020-12-17T12:49:20Z")

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Duplicate to [this issue](https://discourse.slicer.org/t/higher-order-features-on-kidney-segmentation/15000)

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<div class="post-metadata">

**Author:** ![JoostJM](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/joostjm/32/1091_2.png) [@JoostJM](https://discourse.slicer.org/u/JoostJM)\
**Post date:** [December 17, 2020, 12:49pm UTC](https://discourse.slicer.org/t/texture-analysis-on-an-image-with-cysts-taken-out/15098/3 "2020-12-17T12:49:24Z")

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