The coordinates of points in stl model after voxelization

You can use IntersectWithLine function in VTK - see this post. There are many examples in the script repository to show how you can set up a locator.

You can do much more sophisticated analysis of the pedicle screw trajectory, for example analyze bone density traversed by the screw (not just a line but an actual screw shape), as it is done in Pedicle screw simulator extension.

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