# turn a stack of png files into 3D image?

**URL:** https://discourse.slicer.org/t/turn-a-stack-of-png-files-into-3d-image/30076
**Category:** Support
**Created:** [June 16, 2023, 6:15pm UTC](https://discourse.slicer.org/t/turn-a-stack-of-png-files-into-3d-image/30076 "2023-06-16T18:15:37Z")
**Posts on this page:** 2
**Page:** 1

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### Author: ![Shiyang\_Tian](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/shiyang_tian/32/66444_2.png) [@Shiyang\_Tian](https://discourse.slicer.org/u/Shiyang_Tian)
#### Post date: [June 16, 2023, 6:15pm UTC](https://discourse.slicer.org/t/turn-a-stack-of-png-files-into-3d-image/30076/1 "2023-06-16T18:15:38Z")

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Hi I am new to Slicer and I have ten png images already registered, I want to turn them into a 3D object that allows me to view it in different angels, is it something that would be achieved by 3D slicer?

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### Author: ![cpinter](https://sea2.discourse-cdn.com/flex002/user_avatar/discourse.slicer.org/cpinter/32/7995_2.png) [@cpinter](https://discourse.slicer.org/u/cpinter)
#### Post date: [June 19, 2023, 1:09pm UTC](https://discourse.slicer.org/t/turn-a-stack-of-png-files-into-3d-image/30076/2 "2023-06-19T13:09:52Z")

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I did a quick search on the forum. Let us know of none of these topics give you an answer

> [@Unable to do 3D rendering from a sequence of tiff images](https://discourse.slicer.org/t/unable-to-do-3d-rendering-from-a-sequence-of-tiff-images/1345):
>
> Operating system: linux ubuntu16 64bits Slicer version: 4.8.0 Expected behavior: load and render volume from 20 slices (gray scale) tiff images file Actual behavior: able to load file, appear in the Red windows only, no volume rendering.

> [@Convert single files into one .nii](https://discourse.slicer.org/t/convert-single-files-into-one-nii/5407):
>
> Hi, I have multiple single .ima files. These contain single slices info. What I want to achieve is to merge all these into one .nii file. What is the best way to do that? Thanks

> [@Orienting .tiff images in axial/sagittal planes](https://discourse.slicer.org/t/orienting-tiff-images-in-axial-sagittal-planes/28456):
>
> I have two stacks of .png images, imported as .tiff files, corresponding to axial and sagittal MRI data. Once I put them into Slicer using the “Data” panel, both stacks are only visible using the “Axial” view. I am trying to segment a 3D volume using the segmentation editor, but since the views are both marked as Axial, the paint tool for each volume is not aligned. I have tried using transforms to switch the plane of the Sagittal .tiff image stack, but it only flips the data in the axial view. …

> [@How to create 3D from 2D slices?](https://discourse.slicer.org/t/how-to-create-3d-from-2d-slices/16320):
>
> Operating system: MacOS Slicer version:4.11.20210226 Expected behavior: Actual behavior: I want to reconstruct 10 2D images to 3D. I have tried MatLab but I am having difficulties interpolating the gaps in between the adjacent slices. A colleague told me to try Slicer but I don’t know how to navigate the app. Here is the link to the slices:[Dropbox - OCT\_42\_pix - Simplify your life](https://www.dropbox.com/sh/1trxs9fy0btcbsa/AABJ_t-6-JLDXqtAPWU0jBQea?dl=0) I want to recreate a solid 3D. Thanks

> [@Loading a .bmp sequence from directory as a LabelMap](https://discourse.slicer.org/t/loading-a-bmp-sequence-from-directory-as-a-labelmap/24802):
>
> Operating system: Windows 10 Education Slicer version: 5.0.2 Expected behavior: I have a set of segmented slices in a directory. It has 2 classes (0 and 255). The image format is .bmp. I want to load them as a segmentation. Actual behavior: I was following the [official docs](https://slicer.readthedocs.io/en/latest/user_guide/modules/segmentations.html#import-an-existing-segmentation-from-volume-file). However, when I load as a volume and select LabelMap it gives the following error. UpdateFromSeries: Unsupported number of components: 1 != 3 vtkMRMLVolumeArchetypeStorageNode::ReadDataInternal: Cannot read file as a …

> [@Calculating volumes from image stacks, scale does not match up.](https://discourse.slicer.org/t/calculating-volumes-from-image-stacks-scale-does-not-match-up/20133):
>
> Im working on a project where i need to determine the volume of fibrosis in cochlea’s. the raw data consists of +/- 100 microscopic photo’s of the cut up cochlea that i aligned and stacked in order(.tiff file). I coloured the segments ( bone; internal space; fibrosis) and tried to use segment statistics to find the volumes of the different segments. when i did this however i got volumes in the thousands cm3. The size differences between the segments seem right but the scale is not. Can i fix th…
