# \#batch

**URL:** https://discourse.slicer.org/tag/batch/104.md

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## [Batch co-registration using BRAINSfit (script)](https://discourse.slicer.org/t/batch-co-registration-using-brainsfit-script/24285)

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**Author:** [@dokay1](https://discourse.slicer.org/u/dokay1)\
**Replies:** 2\
**Last updated:** [September 9, 2024, 2:36pm UTC](https://discourse.slicer.org/t/batch-co-registration-using-brainsfit-script/24285 "2024-09-09T14:36:54Z")

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For those looking for a script for Batch co-reg. You still have to add the string “FIXED” (case sensitive) to the name of the volume you want to use as the reference/fixed volume for co-registration. PoolOfVolumes = get…

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## [DICOM to NRRD conversion in command line (for PyRadiomics)](https://discourse.slicer.org/t/dicom-to-nrrd-conversion-in-command-line-for-pyradiomics/32306)

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**Author:** [@marcin.jakalski](https://discourse.slicer.org/u/marcin.jakalski)\
**Replies:** 1\
**Last updated:** [October 18, 2023, 5:50pm UTC](https://discourse.slicer.org/t/dicom-to-nrrd-conversion-in-command-line-for-pyradiomics/32306 "2023-10-18T17:50:25Z")

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Hello! I would like to recreate some of the functionality of 3D Slicer in command line for batch analysis of several hundred of patients’ images. I have a set of DICOM images along with their segmentations. For these I w…

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## [Batching Diffusion Tensor Imaging Processing](https://discourse.slicer.org/t/batching-diffusion-tensor-imaging-processing/2790)

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**Author:** [@yasernakib](https://discourse.slicer.org/u/yasernakib)\
**Replies:** 0\
**Last updated:** [May 9, 2018, 5:51pm UTC](https://discourse.slicer.org/t/batching-diffusion-tensor-imaging-processing/2790 "2018-05-09T17:51:38Z")

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Hi people, In short, I’d like to write a batch code to calculate Diffusion Tensors and FA for multiple DTI .nii data. I want to replicate steps in this tutorial DTI-tutorial automatically. I will also need to convert a…

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## [Slicer batch processing question (--no-main-window --python-script)](https://discourse.slicer.org/t/slicer-batch-processing-question-no-main-window-python-script/1863)

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**Author:** [@NaglisR](https://discourse.slicer.org/u/NaglisR)\
**Replies:** 7\
**Last updated:** [January 19, 2018, 9:24pm UTC](https://discourse.slicer.org/t/slicer-batch-processing-question-no-main-window-python-script/1863 "2018-01-19T21:24:42Z")

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Hi everyone, I am trying to find the best way to quickly batch process a number of folders containing head MRI dicom files to .nii files. Basically the pipeline should work like this: import the dicom files \> load them …