Overlay of coregistered brain MRI and CT

Kerezoudis
Fri, 12 Apr 2024 22:09:39 +0000
Support

Operating system: MacOs Sonoma 14.4.1
Slicer version: 5.6.1
Expected behavior: I would like to overlay preoperative brain MRI with postoperative CT (after electrode placement)
Actual behavior: images are not aligned.

Plase see screenshow below. I would like to overlay preoperative T1 MRI (top left) with postoperative CT (top right). Images have already been co-registered in SPM, and alignment looks great in MRICrogl (bottom left). For some reason, the two images look completely out of place with each other in 3D slicer (I tried cropping out unnecessary volume too, but with no sucsess). Any help would be greatly appreciated!

2 posts - 2 participants