SlicerBS for brain image segmentation

Mehran
Tue, 18 May 2021 14:03:54 +0000
Development

Dear members,
I shared a new brain segmentation module using deep learning to extract brain and Tsallis entropy for segmentation. If you work on brain images, please have a look and let me know any feedback.
You need to download SlicerBS (GitHub - Mehrancd/SlicerBS: A Slicer module for brain extraction and segmentation) and add it to Slicer->Edit->Application Settings->Modules, then add the path of the module to “Additional module paths” and restart. The module needs TensorFlow, scikit, etc. which automatically will be installed. If you receive an error, push apply again and probably will solve it. If you need a fast processing, you should increase the voxel size using “resample scaler volume” tool. More detail about algorithm: https://doi.org/10.1016/j.mri.2019.11.002)
and how to use: SlicerBS: Extract and segment brain on MRI images into White Matter, Grey Matter and CSF - YouTube
Mehran

14 posts - 6 participants