# \#brainsfit

**URL:** https://discourse.slicer.org/tag/brainsfit/3.md

[Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md)

---

## [Batch co-registration using BRAINSfit (script)](https://discourse.slicer.org/t/batch-co-registration-using-brainsfit-script/24285)

<div class="topic-metadata">

**Author:** [@dokay1](https://discourse.slicer.org/u/dokay1)\
**Replies:** 2\
**Last updated:** [September 9, 2024, 2:36pm UTC](https://discourse.slicer.org/t/batch-co-registration-using-brainsfit-script/24285 "2024-09-09T14:36:54Z")

</div>

For those looking for a script for Batch co-reg. You still have to add the string “FIXED” (case sensitive) to the name of the volume you want to use as the reference/fixed volume for co-registration. PoolOfVolumes = get…

---

## [Use existing slicer modules with python and cli](https://discourse.slicer.org/t/use-existing-slicer-modules-with-python-and-cli/2743)

<div class="topic-metadata">

**Author:** [@hadasara](https://discourse.slicer.org/u/hadasara)\
**Replies:** 5\
**Last updated:** [May 1, 2018, 4:36pm UTC](https://discourse.slicer.org/t/use-existing-slicer-modules-with-python-and-cli/2743 "2018-05-01T16:36:02Z")

</div>

Hi, I followed this tutorial on how to use existing modules in slicer through cli library: It sounds not bad (considering my understanding in cli is close to 0…) Anyway, since I want to use…

---

## [General Registration (BRAINS) descriptors or features used to make Affine Registration (12 DOF)](https://discourse.slicer.org/t/general-registration-brains-descriptors-or-features-used-to-make-affine-registration-12-dof/1331)

<div class="topic-metadata">

**Author:** [@Mohammed\_EL\_ADOUI](https://discourse.slicer.org/u/Mohammed_EL_ADOUI)\
**Replies:** 2\
**Last updated:** [October 31, 2017, 3:25pm UTC](https://discourse.slicer.org/t/general-registration-brains-descriptors-or-features-used-to-make-affine-registration-12-dof/1331 "2017-10-31T15:25:35Z")

</div>

Operating system: Linux Slicer version: 4.5.0 Recently, I used 3D slicer to make co-registration between breast tumor images (MRI). I used the General Registration (BRAINS), in which I used the linear transform initial…

---

## [Intrasubject Brain preoperative MRI to postoperative CT registration](https://discourse.slicer.org/t/intrasubject-brain-preoperative-mri-to-postoperative-ct-registration/730)

<div class="topic-metadata">

**Author:** [@JNPS](https://discourse.slicer.org/u/JNPS)\
**Replies:** 2\
**Last updated:** [July 21, 2017, 7:18am UTC](https://discourse.slicer.org/t/intrasubject-brain-preoperative-mri-to-postoperative-ct-registration/730 "2017-07-21T07:18:28Z")

</div>

Hey everyone, I am looking for the best way to Register intrasubject preoperative T1 MRI to T2 MRI of the brain Register a postoperative CT (DBS-electrodes) to the coregistered preoperative MRI of the same subject St…

---

## ["ADC map registration" (from slicer-users)](https://discourse.slicer.org/t/adc-map-registration-from-slicer-users/83)

<div class="topic-metadata">

**Author:** [@ihnorton](https://discourse.slicer.org/u/ihnorton)\
**Replies:** 5\
**Last updated:** [April 19, 2017, 2:55pm UTC](https://discourse.slicer.org/t/adc-map-registration-from-slicer-users/83 "2017-04-19T14:55:45Z")

</div>

From slicer-users Dear Slicer users, I'm using Brainsfit to register ADC maps. I scanned 5 times to the same volunteer in order to obtain the repatability of these maps. Even using immobilizer small movements and ro…