# \#cip **URL:** https://discourse.slicer.org/tag/cip/10.md [Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md) --- ## [Chest Imaging Platform in Slicer 5.8](https://discourse.slicer.org/t/chest-imaging-platform-in-slicer-5-8/41687)
**Author:** [@Arash1](https://discourse.slicer.org/u/Arash1)\ **Replies:** 2\ **Last updated:** [April 29, 2025, 11:56am UTC](https://discourse.slicer.org/t/chest-imaging-platform-in-slicer-5-8/41687 "2025-04-29T11:56:59Z")
Hello With the new release (5.8), it seems that the Chest Imaging Platform (CIP) is no longer fully available. It only contains the Analyzer. Upon trying to install it manually, the Slicer software wouldn’t open. I was… --- ## [Interactive Lobe Segmentation hhorizontal fissure on Chest Imaging Platform](https://discourse.slicer.org/t/interactive-lobe-segmentation-hhorizontal-fissure-on-chest-imaging-platform/42584)
**Author:** [@Devanish](https://discourse.slicer.org/u/Devanish)\ **Replies:** 0\ **Last updated:** [April 16, 2025, 11:50am UTC](https://discourse.slicer.org/t/interactive-lobe-segmentation-hhorizontal-fissure-on-chest-imaging-platform/42584 "2025-04-16T11:50:07Z")
Operating system: Windows 11 Slicer version: 5.6.2 Expected behavior: Trying to use Interactive Lung Segmentation of Chest Imaging Platform. Placed fiducials as suggested here: It seemed to work fine 2 weeks ago. A… --- ## [We aren't getting the filtering options to display while using parenchyma analysis package on a few chest CTs.](https://discourse.slicer.org/t/we-arent-getting-the-filtering-options-to-display-while-using-parenchyma-analysis-package-on-a-few-chest-cts/33098)
**Author:** [@punyasharoul](https://discourse.slicer.org/u/punyasharoul)\ **Replies:** 3\ **Last updated:** [November 29, 2023, 4:49pm UTC](https://discourse.slicer.org/t/we-arent-getting-the-filtering-options-to-display-while-using-parenchyma-analysis-package-on-a-few-chest-cts/33098 "2023-11-29T16:49:46Z")
Operating system: Windows & MAC Slicer version: 4-10-2 Expected behavior: Filtering on and off should display options. output for attenuation areas should be generated as numbers Actual behavior: We are facing … --- ## [Embedding Segment Editor in Layout Crashes Slicer 5 Upon Reload](https://discourse.slicer.org/t/embedding-segment-editor-in-layout-crashes-slicer-5-upon-reload/26075)
**Author:** [@rbumm](https://discourse.slicer.org/u/rbumm)\ **Replies:** 8\ **Last updated:** [November 6, 2022, 4:23pm UTC](https://discourse.slicer.org/t/embedding-segment-editor-in-layout-crashes-slicer-5-upon-reload/26075 "2022-11-06T16:23:30Z")
The scripted SlicerCIP “Calibration” module implements a reduced Slicer “Segment Editor” in its layout to define “Air” and “Blood” regions in lung CT. The startup works fine, but a script “Reload” in development mode ca… --- ## [Interactive lung lobe segmentation fails with NIFTI volume](https://discourse.slicer.org/t/interactive-lung-lobe-segmentation-fails-with-nifti-volume/24052)
**Author:** [@rbumm](https://discourse.slicer.org/u/rbumm)\ **Replies:** 4\ **Last updated:** [June 26, 2022, 9:03pm UTC](https://discourse.slicer.org/t/interactive-lung-lobe-segmentation-fails-with-nifti-volume/24052 "2022-06-26T21:03:14Z")
Hi, I am trying to generate lung lobe labels for a MONAI Label segmentation with the “Interactive Lobe Segmentation”. With a COV-19 lung CT demo dataset (as well as with the Slicers “CTChest” demo) I get: … which … --- ## [Exporting CSV with parenchyma analysis module](https://discourse.slicer.org/t/exporting-csv-with-parenchyma-analysis-module/10697)
**Author:** [@Ezio\_Lanza](https://discourse.slicer.org/u/Ezio_Lanza)\ **Replies:** 58\ **Last updated:** [April 13, 2022, 8:18pm UTC](https://discourse.slicer.org/t/exporting-csv-with-parenchyma-analysis-module/10697 "2022-04-13T20:18:07Z")
Hello everyone, I’m having troubles exporting results from the parenchyma analysis module in CSV. It only exports the first row without the resulting values. Also, I cannot copy and paste to excel which instead is possi… --- ## [Tracheal wall segmentation](https://discourse.slicer.org/t/tracheal-wall-segmentation/22646)
**Author:** [@Eserval](https://discourse.slicer.org/u/Eserval)\ **Replies:** 3\ **Last updated:** [March 24, 2022, 8:40pm UTC](https://discourse.slicer.org/t/tracheal-wall-segmentation/22646 "2022-03-24T20:40:17Z")
Hello everyone, I’m trying to expand the usage of Slicer in tracheal stenotic disease. For that, it would be necessary to segment the tracheal wall with its thickness. The workflows that I use to segment the airway are … --- ## [Best strategy to integrate airway segmentation into LungCTSegmenter?](https://discourse.slicer.org/t/best-strategy-to-integrate-airway-segmentation-into-lungctsegmenter/19674)
**Author:** [@rbumm](https://discourse.slicer.org/u/rbumm)\ **Replies:** 16\ **Last updated:** [September 18, 2021, 7:27pm UTC](https://discourse.slicer.org/t/best-strategy-to-integrate-airway-segmentation-into-lungctsegmenter/19674 "2021-09-18T19:27:44Z")
I am planning to integrate an airway segmentation into the LungCTSegmenter extension. Would it make sense to invest time and connect the current CIP airway segmentation module or would you recommend writing that complet… --- ## [Problem with CIP 3d model and exportation](https://discourse.slicer.org/t/problem-with-cip-3d-model-and-exportation/11113)
**Author:** [@javierfuster](https://discourse.slicer.org/u/javierfuster)\ **Replies:** 1\ **Last updated:** [April 27, 2021, 8:17pm UTC](https://discourse.slicer.org/t/problem-with-cip-3d-model-and-exportation/11113 "2021-04-27T20:17:39Z")
Hi everyone, I am making the lobe lung segmentation (Iteractive Lobe Segmentation) with the extension CIP. Everything works fine but at the moment that I want to make a 3D model it results imposible with the lobe segmen… --- ## [GeneraeOverlayImages in CIP not working](https://discourse.slicer.org/t/generaeoverlayimages-in-cip-not-working/16044)
**Author:** [@akshay\_pillai](https://discourse.slicer.org/u/akshay_pillai)\ **Replies:** 1\ **Last updated:** [February 17, 2021, 11:39pm UTC](https://discourse.slicer.org/t/generaeoverlayimages-in-cip-not-working/16044 "2021-02-17T23:39:23Z")
Operating system: Windows Slicer version:4.11 Expected behavior: Actual behavior: I’m trying to use Generate Overlay Images cip script in my ubuntu terminal using the CLI command-line tools. Can anyone tell me how to… --- ## [Automatic lung lobe segmentation](https://discourse.slicer.org/t/automatic-lung-lobe-segmentation/15175)
**Author:** [@PaoloZaffino](https://discourse.slicer.org/u/PaoloZaffino)\ **Replies:** 7\ **Last updated:** [December 27, 2020, 5:51pm UTC](https://discourse.slicer.org/t/automatic-lung-lobe-segmentation/15175 "2020-12-27T17:51:03Z")
Hi all, I have multiple CTs and lung contours. I would partition the lungs into subvolumes (as in " lobe segmentation", Chest Imaging Platform). The point that I need something completely automatic and runnable via CL… --- ## [Lung airway branching calculator](https://discourse.slicer.org/t/lung-airway-branching-calculator/1364)
**Author:** [@jbassein](https://discourse.slicer.org/u/jbassein)\ **Replies:** 9\ **Last updated:** [November 2, 2020, 5:14pm UTC](https://discourse.slicer.org/t/lung-airway-branching-calculator/1364 "2020-11-02T17:14:16Z")
Hey Guys, I am trying to calculate the number of airway branch points in the lungs of several patient CT scans. Does anyone know how to do this in a fairly automatic fashion? I am also looking to calculate the total di… --- ## [CIP develop branch build failure on windows and ubuntu(CIP, slicer)](https://discourse.slicer.org/t/cip-develop-branch-build-failure-on-windows-and-ubuntu-cip-slicer/13810)
**Author:** [@akshay\_pillai](https://discourse.slicer.org/u/akshay_pillai)\ **Replies:** 1\ **Last updated:** [October 2, 2020, 11:52pm UTC](https://discourse.slicer.org/t/cip-develop-branch-build-failure-on-windows-and-ubuntu-cip-slicer/13810 "2020-10-02T23:52:18Z")
Hello, I have been trying to build CIP on my windows computer with the develop branch. I have tried different versions of cmake including 3.5.2, 3.5, 3.15, and also tried different versions of gcc such as gcc 5.4, 7.4, … --- ## [Airway anatomy question](https://discourse.slicer.org/t/airway-anatomy-question/13731)
**Author:** [@Florence](https://discourse.slicer.org/u/Florence)\ **Replies:** 0\ **Last updated:** [September 28, 2020, 12:30pm UTC](https://discourse.slicer.org/t/airway-anatomy-question/13731 "2020-09-28T12:30:58Z")
Hi, I am a 3D artist looking to build an anatomical lung model as a personal project. To do so, I started by using 3DSlicer and used 2 different lungs CT scans that could serve as a base. I tried to identify the segmen… --- ## [Chest Imaging Platform (CIP) installation in Linus Ubuntu & python](https://discourse.slicer.org/t/chest-imaging-platform-cip-installation-in-linus-ubuntu-python/11943)
**Author:** [@skuanar](https://discourse.slicer.org/u/skuanar)\ **Replies:** 1\ **Last updated:** [June 9, 2020, 11:40am UTC](https://discourse.slicer.org/t/chest-imaging-platform-cip-installation-in-linus-ubuntu-python/11943 "2020-06-09T11:40:39Z")
Hi, I need small help for the Chest Imaging Platform (CIP) installation in Linus Ubuntu & python set up and looking for the installation steps. Basically I would like to use the “GeneratePartialLungLabelMap” function i… --- ## [Prepare labelmap for parenchyma analysis](https://discourse.slicer.org/t/prepare-labelmap-for-parenchyma-analysis/411)
**Author:** [@broccoli](https://discourse.slicer.org/u/broccoli)\ **Replies:** 8\ **Last updated:** [May 20, 2020, 12:07am UTC](https://discourse.slicer.org/t/prepare-labelmap-for-parenchyma-analysis/411 "2020-05-20T00:07:42Z")
I want to use the Parenchyma Analysis module, but want to use a segmentation that was done by different software. What I tried: - Convert the surface mesh to a label map using the Model to Label Map module. - Use this … --- ## [Hyuman btonchial tree segmentation](https://discourse.slicer.org/t/hyuman-btonchial-tree-segmentation/6438)
**Author:** [@MohammadReza](https://discourse.slicer.org/u/MohammadReza)\ **Replies:** 1\ **Last updated:** [April 8, 2019, 6:48pm UTC](https://discourse.slicer.org/t/hyuman-btonchial-tree-segmentation/6438 "2019-04-08T18:48:03Z")
hello dear I want to segment human bronchial tree from chest CT, whats the range of hounsfild unit for threshold in segmentation? I have seen that you generate them in LungSegments\_Scene in references. please help me ho… --- ## [Problem with Lung lesion segmentation](https://discourse.slicer.org/t/problem-with-lung-lesion-segmentation/3424)
**Author:** [@Daan](https://discourse.slicer.org/u/Daan)\ **Replies:** 9\ **Last updated:** [July 13, 2018, 8:27am UTC](https://discourse.slicer.org/t/problem-with-lung-lesion-segmentation/3424 "2018-07-13T08:27:12Z")
Dear all, We are using the lung lesion analyser to make segmentations of lung nodules. When we segment the nodule, we also get some kind of planes in our segmentations as can be seen in the image I have added. When we c… --- ## [Extension not available in Nightly](https://discourse.slicer.org/t/extension-not-available-in-nightly/3469)
**Author:** [@jonieva](https://discourse.slicer.org/u/jonieva)\ **Replies:** 1\ **Last updated:** [July 12, 2018, 6:13pm UTC](https://discourse.slicer.org/t/extension-not-available-in-nightly/3469 "2018-07-12T18:13:48Z")
Hi guys, Our Chest\_Imaging\_Platform extension is not available in the Nightly build. I checked the CDash and everything looks fine (http://slicer.cdash.org/index.php?project=Slicer4&filtercount=1&showfilters=1&field1=bu… --- ## [Lung airway segmentation](https://discourse.slicer.org/t/lung-airway-segmentation/2467)
**Author:** [@anitakh1](https://discourse.slicer.org/u/anitakh1)\ **Replies:** 40\ **Last updated:** [June 21, 2018, 3:57pm UTC](https://discourse.slicer.org/t/lung-airway-segmentation/2467 "2018-06-21T15:57:19Z")
i want to use lung airway segmentation tool in 3D slicer but i can’t find it in the slicer i downloaded. pl help --- ## [AirwaySegmentation Module](https://discourse.slicer.org/t/airwaysegmentation-module/1467)
**Author:** [@jbassein](https://discourse.slicer.org/u/jbassein)\ **Replies:** 0\ **Last updated:** [November 15, 2017, 10:58pm UTC](https://discourse.slicer.org/t/airwaysegmentation-module/1467 "2017-11-15T22:58:25Z")
Operating system: Windows Slicer version: 4.6.2 Expected behavior: Airway segmentation of larger airways Actual behavior: For some reason every time I run the algorithm it manages to map some of the larger airways but… --- ## [PC DICOM Reader Recommendations](https://discourse.slicer.org/t/pc-dicom-reader-recommendations/1209)
**Author:** [@didelkope](https://discourse.slicer.org/u/didelkope)\ **Replies:** 1\ **Last updated:** [October 12, 2017, 3:08pm UTC](https://discourse.slicer.org/t/pc-dicom-reader-recommendations/1209 "2017-10-12T15:08:57Z")
Operating system: Windows 10 Slicer version:4.7 Expected behavior: Chest Imaging Platform body comp and parenchyma subtype training working Actual behavior: Unable to color in tissue on body comp, Fiducial points for … --- ## [Autmatic airway segmentation](https://discourse.slicer.org/t/autmatic-airway-segmentation/1167)
**Author:** [@Eduardo\_Sanchez\_Pere](https://discourse.slicer.org/u/Eduardo_Sanchez_Pere)\ **Replies:** 3\ **Last updated:** [October 7, 2017, 12:54pm UTC](https://discourse.slicer.org/t/autmatic-airway-segmentation/1167 "2017-10-07T12:54:43Z")
Someone can give me a hand with the extension airway segmentation, because I don´t know how to make it work. I’ve tried to prove it with the CT chest example dicom but it never renders anything. Help please! --- ## [Strange occurances on load and Timeout](https://discourse.slicer.org/t/strange-occurances-on-load-and-timeout/914)
**Author:** [@stevenagl12](https://discourse.slicer.org/u/stevenagl12)\ **Replies:** 1\ **Last updated:** [August 21, 2017, 8:54pm UTC](https://discourse.slicer.org/t/strange-occurances-on-load-and-timeout/914 "2017-08-21T20:54:29Z")
I have todays nightly build downloaded onto my computer and the command window for the system keeps saying: Traceback (most recent call last): File “”, line 1, in File “C:/Users/salewis/AppData/Roaming/NA-MIC/Extensi… --- ## [How to make lung lesion analysis by parenchyma subtype training in Chest Imaging Platform module](https://discourse.slicer.org/t/how-to-make-lung-lesion-analysis-by-parenchyma-subtype-training-in-chest-imaging-platform-module/682)
**Author:** [@chenjl1972](https://discourse.slicer.org/u/chenjl1972)\ **Replies:** 1\ **Last updated:** [July 19, 2017, 4:06am UTC](https://discourse.slicer.org/t/how-to-make-lung-lesion-analysis-by-parenchyma-subtype-training-in-chest-imaging-platform-module/682 "2017-07-19T04:06:48Z")
I plan to make lung lesion analysis in IPF patients based on Dr.Samuel Y. Asharticle’s article:“Densitometric and local histogram based analysis of computed tomography images in patients with idiopathic pulmonary fibrosi… --- ## [How to go to cumulative histogram from lung density histogram in parenchyma analysis module?](https://discourse.slicer.org/t/how-to-go-to-cumulative-histogram-from-lung-density-histogram-in-parenchyma-analysis-module/163)
**Author:** [@broccoli](https://discourse.slicer.org/u/broccoli)\ **Replies:** 4\ **Last updated:** [April 24, 2017, 1:09pm UTC](https://discourse.slicer.org/t/how-to-go-to-cumulative-histogram-from-lung-density-histogram-in-parenchyma-analysis-module/163 "2017-04-24T13:09:01Z")
Hello, Below you’ll find the lung density histogram I’ve generated with the parenchyma analysis module provided in the chest imaging platform extension. How can I use this histogram to determine the density (HU) at 1…