# \#docker

**URL:** https://discourse.slicer.org/tag/docker/229.md

[Latest](https://discourse.slicer.org/latest.md) · [Categories](https://discourse.slicer.org/categories.md) · [Tags](https://discourse.slicer.org/tags.md)

---

## [Timeout waiting for kernel\_info reply from 605fe2fe-6d06-4d71-a2e1-001bf](https://discourse.slicer.org/t/timeout-waiting-for-kernel-info-reply-from-605fe2fe-6d06-4d71-a2e1-001bf/41551)

<div class="topic-metadata">

**Author:** [@Saurabh\_Mishra](https://discourse.slicer.org/u/Saurabh_Mishra)\
**Replies:** 0\
**Last updated:** [February 7, 2025, 11:56am UTC](https://discourse.slicer.org/t/timeout-waiting-for-kernel-info-reply-from-605fe2fe-6d06-4d71-a2e1-001bf/41551 "2025-02-07T11:56:02Z")

</div>

I am using one dockerfile to create one jupyterImage # Base image with Jupyter Notebook FROM jupyter/base-notebook # Set environment variables ENV DEBIAN\_FRONTEND=noninteractive ENV TZ=Etc/UTC ENV DISPLAY=:1 # Switch …

---

## [Unable to create a Docker container using a downloaded 3DSlicer version](https://discourse.slicer.org/t/unable-to-create-a-docker-container-using-a-downloaded-3dslicer-version/41384)

<div class="topic-metadata">

**Author:** [@jhlegarreta](https://discourse.slicer.org/u/jhlegarreta)\
**Replies:** 1\
**Last updated:** [January 31, 2025, 2:16am UTC](https://discourse.slicer.org/t/unable-to-create-a-docker-container-using-a-downloaded-3dslicer-version/41384 "2025-01-31T02:16:10Z")

</div>

Hi, I have been trying to build a Docker image to run a given 3DSlicer version (5.2.2) on an HPC system. Once I have the base installation working, I will be willing to instal SlicerDMRI, UKFTractography and SlicerWMA e…

---

## [FastSurfer: Problem running with multiple subjects](https://discourse.slicer.org/t/fastsurfer-problem-running-with-multiple-subjects/36759)

<div class="topic-metadata">

**Author:** [@Farah\_N](https://discourse.slicer.org/u/Farah_N)\
**Replies:** 1\
**Last updated:** [June 13, 2024, 8:47pm UTC](https://discourse.slicer.org/t/fastsurfer-problem-running-with-multiple-subjects/36759 "2024-06-13T20:47:00Z")

</div>

I am running FastSufer for multiple subjects, but I don’t get it whether the problem is with the ‘–entrypoint’ flag or docker. (base) user1nrx@srv-imgrm-04:~/software\_research/my\_fastsurfer\_analysis/DATA$ sudo docker run…

---

## [Docker container with 3D Slicer build to build and test an extension](https://discourse.slicer.org/t/docker-container-with-3d-slicer-build-to-build-and-test-an-extension/32461)

<div class="topic-metadata">

**Author:** [@jhlegarreta](https://discourse.slicer.org/u/jhlegarreta)\
**Replies:** 0\
**Last updated:** [October 29, 2023, 9:03pm UTC](https://discourse.slicer.org/t/docker-container-with-3d-slicer-build-to-build-and-test-an-extension/32461 "2023-10-29T21:03:37Z")

</div>

Hi, related to Adding a CI build to a Slicer extension, I am willing to add an additional GitHub Actions workflow to check building and testing an extension this time using a Slicer Docker image, so that I can know earl…

---

## [Command line scripting with SlicerDockers](https://discourse.slicer.org/t/command-line-scripting-with-slicerdockers/25355)

<div class="topic-metadata">

**Author:** [@NaglisR](https://discourse.slicer.org/u/NaglisR)\
**Replies:** 16\
**Last updated:** [August 16, 2023, 3:14pm UTC](https://discourse.slicer.org/t/command-line-scripting-with-slicerdockers/25355 "2023-08-16T15:14:16Z")

</div>

Hi all, A question regarding executing command line scripts while using SlicerDockers: I am using GitHub - pieper/SlicerDockers: docker config files for slicer, everything works succesfully, I am able to access Slicer…

---

## [MonaiLabel and 3D Slicer Image together on one docker.](https://discourse.slicer.org/t/monailabel-and-3d-slicer-image-together-on-one-docker/28496)

<div class="topic-metadata">

**Author:** [@lenlobo](https://discourse.slicer.org/u/lenlobo)\
**Replies:** 1\
**Last updated:** [March 21, 2023, 8:24pm UTC](https://discourse.slicer.org/t/monailabel-and-3d-slicer-image-together-on-one-docker/28496 "2023-03-21T20:24:12Z")

</div>

Hello, I am quite new to Monai and Slicer, facing some difficulties here at the moment. I know there is a MonaiLabel docker image, and there is a 3dSlicer docker image. I want to run both of these together on a server a…

---

## [Lassoan/slicer-notebook](https://discourse.slicer.org/t/lassoan-slicer-notebook/25483)

<div class="topic-metadata">

**Author:** [@Katya\_Stansfield](https://discourse.slicer.org/u/Katya_Stansfield)\
**Replies:** 0\
**Last updated:** [September 29, 2022, 2:21pm UTC](https://discourse.slicer.org/t/lassoan-slicer-notebook/25483 "2022-09-29T14:21:35Z")

</div>

Hello, I have been using “lassoan/slicer-notebook” image to run Slicer Jupyter in a local Docker container. However, this image does not contain many extensions and I had to install SlicerIGT for every session. Here is…

---

## [Load DICOM in Slicer UI and in Jupyter Docker container](https://discourse.slicer.org/t/load-dicom-in-slicer-ui-and-in-jupyter-docker-container/25372)

<div class="topic-metadata">

**Author:** [@Katya\_Stansfield](https://discourse.slicer.org/u/Katya_Stansfield)\
**Replies:** 0\
**Last updated:** [September 21, 2022, 9:31am UTC](https://discourse.slicer.org/t/load-dicom-in-slicer-ui-and-in-jupyter-docker-container/25372 "2022-09-21T09:31:26Z")

</div>

Hello – may I please ask for some guidance in using Slicer via Jupyter in a Docker container? I am trying to load some of my DICOM data files, which load with no problem in a local Slicer UI However, when I follow in…

---

## [Docker Dicom Listener issue](https://discourse.slicer.org/t/docker-dicom-listener-issue/25283)

<div class="topic-metadata">

**Author:** [@dSC](https://discourse.slicer.org/u/dSC)\
**Replies:** 7\
**Last updated:** [September 17, 2022, 3:27pm UTC](https://discourse.slicer.org/t/docker-dicom-listener-issue/25283 "2022-09-17T15:27:26Z")

</div>

Hello Guys, I’m trying to start storage listener in Slicer in the web (docker version) this is the error. Problem trying to start DICOM listener: \[Errno 2\] No such file or directory: ‘ps’ Any suggestion? Best Dani…

---

## [Converting DICOM to NRRD on Docker via a Python script](https://discourse.slicer.org/t/converting-dicom-to-nrrd-on-docker-via-a-python-script/21096)

<div class="topic-metadata">

**Author:** [@adouv](https://discourse.slicer.org/u/adouv)\
**Replies:** 7\
**Last updated:** [June 3, 2022, 12:18pm UTC](https://discourse.slicer.org/t/converting-dicom-to-nrrd-on-docker-via-a-python-script/21096 "2022-06-03T12:18:11Z")

</div>

Hello, I would like to start off thanking all of you for the great work with 3D Slicer. It is truly a phenomenal piece of software! The issue we are having requires some description, so I will split this question into tw…

---

## [How to install SlicerRT extension in docker (slicerDocker) container?](https://discourse.slicer.org/t/how-to-install-slicerrt-extension-in-docker-slicerdocker-container/21270)

<div class="topic-metadata">

**Author:** [@ROSENty](https://discourse.slicer.org/u/ROSENty)\
**Replies:** 1\
**Last updated:** [January 3, 2022, 11:09am UTC](https://discourse.slicer.org/t/how-to-install-slicerrt-extension-in-docker-slicerdocker-container/21270 "2022-01-03T11:09:15Z")

</div>

I had a docker container from docker images(https://github.com/Slicer/SlicerDocker) and (https://hub.docker.com/r/slicer/slicer-notebook). And I want to use the extension slicerRT, but I don’t know how to install SlicerR…

---

## [Build Slicer docker image with preinstalled elastix](https://discourse.slicer.org/t/build-slicer-docker-image-with-preinstalled-elastix/10542)

<div class="topic-metadata">

**Author:** [@Alex\_Vergara](https://discourse.slicer.org/u/Alex_Vergara)\
**Replies:** 21\
**Last updated:** [December 30, 2021, 5:59pm UTC](https://discourse.slicer.org/t/build-slicer-docker-image-with-preinstalled-elastix/10542 "2021-12-30T17:59:17Z")

</div>

The title says it all. I want a docker image of slicer with elastix extension preinstalled. My current Dockerfile is the following: # start from base with centos & qt5 FROM slicer/buildenv-qt5-centos7:latest WORKDIR /u…

---

## [How to install extensions from the extension manager with PythonSlicer](https://discourse.slicer.org/t/how-to-install-extensions-from-the-extension-manager-with-pythonslicer/20847)

<div class="topic-metadata">

**Author:** [@pll\_llq](https://discourse.slicer.org/u/pll_llq)\
**Replies:** 3\
**Last updated:** [December 1, 2021, 7:32am UTC](https://discourse.slicer.org/t/how-to-install-extensions-from-the-extension-manager-with-pythonslicer/20847 "2021-12-01T07:32:39Z")

</div>

Hi :wave: I’m building a docker container chain for testing purposes and I ran into a problem that I can’t install an extension from the extension manager while building the image. Normally I would use something simila…

---

## [Slicer template based build environment using docker](https://discourse.slicer.org/t/slicer-template-based-build-environment-using-docker/20398)

<div class="topic-metadata">

**Author:** [@Dwij\_Mistry](https://discourse.slicer.org/u/Dwij_Mistry)\
**Replies:** 9\
**Last updated:** [November 11, 2021, 5:40am UTC](https://discourse.slicer.org/t/slicer-template-based-build-environment-using-docker/20398 "2021-11-11T05:40:18Z")

</div>

Hi, I am very new in Docker build environment setup can you please explain me how to setup and use docker baed environment. I have gone through GitHub - Slicer/SlicerBuildEnvironment: A repository of scripts to set up …

---

## [Ubuntu dockerbuild environment](https://discourse.slicer.org/t/ubuntu-dockerbuild-environment/16322)

<div class="topic-metadata">

**Author:** [@RafaelPalomar](https://discourse.slicer.org/u/RafaelPalomar)\
**Replies:** 3\
**Last updated:** [March 3, 2021, 3:46pm UTC](https://discourse.slicer.org/t/ubuntu-dockerbuild-environment/16322 "2021-03-03T15:46:40Z")

</div>

Yesterday in the devs hangout we discussed about making a dockerbuild environment for testing 3D Slicer in newer Ubuntu distributions. I’ve looked at the existing ubuntu-2004-gcc9/Dockerfile and have a few questions: T…

---

## [Docker image for \`nightly-master\`](https://discourse.slicer.org/t/docker-image-for-nightly-master/8273)

<div class="topic-metadata">

**Author:** [@unnmdnwb3](https://discourse.slicer.org/u/unnmdnwb3)\
**Replies:** 5\
**Last updated:** [September 23, 2019, 8:32pm UTC](https://discourse.slicer.org/t/docker-image-for-nightly-master/8273 "2019-09-23T20:32:08Z")

</div>

Hello everyone, We’d like to introduce a new docker image unnmdnwb3/slicer3d-nightly, which offers an environment to test extensions for Slicer 4.11.x (which supports Python 3 ). The image is based on Slicer’s branch ni…

---

## [Tests failing in docker container in no window mode](https://discourse.slicer.org/t/tests-failing-in-docker-container-in-no-window-mode/8357)

<div class="topic-metadata">

**Author:** [@Alex\_Vergara](https://discourse.slicer.org/u/Alex_Vergara)\
**Replies:** 2\
**Last updated:** [September 12, 2019, 11:59am UTC](https://discourse.slicer.org/t/tests-failing-in-docker-container-in-no-window-mode/8357 "2019-09-12T11:59:58Z")

</div>

I am testing my extensions in a docker container and I have messages like this one 1: Traceback (most recent call last): 1: File "/usr/src/Slicer-build/Slicer-build/lib/Slicer-4.11/qt-scripted-modules/DICOM.py", line …

---

## [GLSL shaders use non supported version 1.50 that makes CI/CD to fail in a docker container](https://discourse.slicer.org/t/glsl-shaders-use-non-supported-version-1-50-that-makes-ci-cd-to-fail-in-a-docker-container/8307)

<div class="topic-metadata">

**Author:** [@Alex\_Vergara](https://discourse.slicer.org/u/Alex_Vergara)\
**Replies:** 2\
**Last updated:** [September 5, 2019, 12:47pm UTC](https://discourse.slicer.org/t/glsl-shaders-use-non-supported-version-1-50-that-makes-ci-cd-to-fail-in-a-docker-container/8307 "2019-09-05T12:47:26Z")

</div>

@lassoan, @cpinter, we are trying to test our extension in a docker container as described by @unnmdnwb3 in this thread. However, the test fails when executing slicer with these errors. Basically the VTK version that i…

---

## [Test extension in Docker](https://discourse.slicer.org/t/test-extension-in-docker/8120)

<div class="topic-metadata">

**Author:** [@unnmdnwb3](https://discourse.slicer.org/u/unnmdnwb3)\
**Replies:** 14\
**Last updated:** [August 30, 2019, 12:40pm UTC](https://discourse.slicer.org/t/test-extension-in-docker/8120 "2019-08-30T12:40:38Z")

</div>

Hello everyone, I’d like to set up a CI-pipeline with Gitlab CI, which should enable continuous testing of our extension (in python). However, it’s not quite obvious to me which dependencies I therefore have to integrat…