How versatile is the HD Brain Extraction extension?

sulli419
Thu, 19 Jun 2025 17:06:33 +0000
Support

Hi,

I am wondering how well the HD Brain Extraction extension might work on anatomical scans of mouse brains. Has anyone tried this? Were any efforts made to make this trained model more robust/generalizable/versatile, at least for different human datasets? Are there other easy to use deep learning models in slicer that might work for mouse brains?

p.s., My old approach was just to install an extension and give it try, but this seemed like it was destabilizing slicer and also not all of the large extension files were uninstalling with slicer. Hence why I’m inquiring first now.

Keep finding new things I love about slicer. Your work is much appreciated!

Steve

github.com

GitHub - lassoan/SlicerHDBrainExtraction: 3D Slicer extension for accessing HD-BET brain...

3D Slicer extension for accessing HD-BET brain extraction tool for skull stripping in brain MRI images.

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