Combine Multiple Orientations / Volumes in Axial View

waterbottle
Thu, 27 Jun 2024 17:33:05 +0000
Support

Hi all,

Still new to slicer. I am working on MRIs in Slicer. Some MRIs load in as one big volume which works for my needs, however others come split into “imageOrientationPatient X” where X = some number, typically from 1-6. I’d like to combine all of these different orientations which are all in the Axial view so that I can use TotalSegmentor on them. Please see below image to see what I mean:

I’m not totally sure if this is what the Stitch Volumes module is for, but I tried that and get the below error. Really appreciate any help yall can provide

Thank you so much!

2 posts - 1 participant