CIP develop branch build failure on windows and ubuntu(CIP, slicer)

akshay_pillai
Fri, 02 Oct 2020 01:07:55 +0000
Development

Hello,

I have been trying to build CIP on my windows computer with the develop branch. I have tried different versions of cmake including 3.5.2, 3.5, 3.15, and also tried different versions of gcc such as gcc 5.4, 7.4, 8.1. But I have not been able to successfully build it. I have also tried using the ubuntu WSL with ubuntu 18.04, 16.04 also with different cmake and gcc versions. It always keeps erroring out. Please let me know what I can do to solve this. Here is the error that I get:

HEAD is now at 31dc6a08b8 BUG: Ensure VTK_PYTHON_SITE_PACKAGES_SUFFIX is set in vtkInitializeWrapPython
Submodule ‘VTK-m’ (https://gitlab.kitware.com/vtk/vtk-m.git) registered for path ‘ThirdParty/vtkm/vtk-m’
Cloning into ‘C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/vtkm/vtk-m’…
Updating files: 100% (8/8), done.
Already on ‘master’
process_begin: CreateProcess(NULL, CIPPython-install\Scripts\conda install --yes -c conda-forge nipype==0.12.1, …) failed.
make (e=2): The system cannot find the file specified.
make[2]: *** [CIPPython-prefix/src/CIPPython-stamp/CIPPython-installnipype] Error 2
make[1]: *** [CMakeFiles/CIPPython.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs…
In file included from C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/lzma/vtklzma/src/liblzma/common/common.h:19:0,
from C:\Users\pilht4\Desktop\CIP\ChestImagingPlatform-build\VTKv8\ThirdParty\lzma\vtklzma\src\liblzma\check\check.h:16,
from C:\Users\pilht4\Desktop\CIP\ChestImagingPlatform-build\VTKv8\ThirdParty\lzma\vtklzma\src\liblzma\check\check.c:13:
C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/lzma/vtklzma/src/common/mythread.h:138:33: error: unknown type name ‘sigset_t’
mythread_sigmask(int how, const sigset_t *restrict set,
^
C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/lzma/vtklzma/src/common/mythread.h:139:3: error: unknown type name ‘sigset_t’
sigset_t *restrict oset)
^
C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/lzma/vtklzma/src/common/mythread.h: In function ‘mythread_create’:
C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/lzma/vtklzma/src/common/mythread.h:158:2: error: unknown type name ‘sigset_t’
sigset_t old;
^
C:/Users/pilht4/Desktop/CIP/ChestImagingPlatform-build/VTKv8/ThirdParty/lzma/vtklzma/src/common/mythread.h:159:2: error: unknown type name ‘sigset_t’
sigset_t all;
^
make[5]: *** [ThirdParty/lzma/vtklzma/CMakeFiles/vtklzma.dir/src/liblzma/check/check.c.obj] Error 1
make[4]: *** [ThirdParty/lzma/vtklzma/CMakeFiles/vtklzma.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs…
CMakeFiles\vtkglew.dir/objects.a(glew.c.obj):glew.c:(.text+0x16ea0): multiple definition of `DllMainCRTStartup’
C:/ProgramData/chocolatey/lib/mingw/tools/install/mingw64/bin/…/lib/gcc/x86_64-w64-mingw32/5.4.0/…/…/…/…/x86_64-w64-mingw32/lib/…/lib/dllcrt2.o:crtdll.c:(.text+0x3e0): first defined here
collect2.exe: error: ld returned 1 exit status
make[5]: *** [bin/libvtkglew-8.2.dll] Error 1
make[4]: *** [ThirdParty/glew/vtkglew/CMakeFiles/vtkglew.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [VTKv8-prefix/src/VTKv8-stamp/VTKv8-build] Error 2
make[1]: *** [CMakeFiles/VTKv8.dir/all] Error 2
make: *** [all] Error 2

Also attached is the cmakeOutputLog.
cmakeoutput file

Please let me know if there are any solutions to this issue. Any help is appreciated. If anyone has built on windows please let me know what steps to follow. Thank you.

2 posts - 2 participants