Batch Processing with SlicerLungCTAnalyzer

omegayen
Thu, 01 May 2025 22:22:35 +0000
Support

Hi @rbumm thanks for your work.

I am working with SlicerLungCTAnalyzer and having difficulty with batch processing with both the segmenter and analyzer. I reviewed the instructions here Batch processing with Lung CT Segmenter · Slicer/SlicerLungCTAnalyzer Wiki · GitHub as I want to do the segmenter first before then doing the analyzer.

I always get this error as below

My input folder points to something like C:\input and I have folders 1, 2, 3, ..etc in it and each subfolder contains a xxx_ct.nii.gz file. Use AI is selected and checked.

Test mode does not work either. I am checking the box for Input is NIFTI format. Any ideas?

3 posts - 2 participants