How to import a slicer segmentation into other tools like matlab?

Chongran_Sun
Fri, 31 Aug 2018 16:23:56 +0000
Support

Operating system: Mac OS
Slicer version: 4.8.1
Expected behavior: I saved my tumor segmentation as a nrrd file or seg.nrrd file and open them in other tools (MRIcron, matlab).

When I open the segmentation, I need to have a blank background to show the location of the tumor like:

Actual behavior: I found the location information was lost, the size of the matrix was the max diameter of the tumor, but without the blank background.

3 posts - 3 participants