Module for manual segmentation (MONAI Label-like)

nicola-dallosto
Wed, 10 Apr 2024 20:27:39 +0000
Development

I need to create a module to segment nifti images. My idea was to recreate the settings panel of MONAI Label (see screenshot) because it consent to connect to a server and there is a button to save the annotation and a button to upload another image from the dataset. I don’t need all the other stuff for automatic segmentation, but Segment Editor to manually segment images.
The main problem is that when you start a MONAILabel server, it also upload pretrained models for automatic segmentation. So, the function present in MONAI Label module does not simply retrieve data from a server, but it imports also the pretrained models and other information. However, I only need a section in my module that has the function to connect to the database’s URL. The module then upload the first image of the dataset, the user segments it, save the segmentation, click “next sample”, another image is uploaded, and so on.
Is there anyone that can help me?

3 posts - 2 participants