PyRadiomics for 2D images (png or nrrd)

MachadoL
Mon, 01 Apr 2019 19:17:53 +0000
Support

Hi everyone,

I am trying to extract radiomic features from 2D images (PNG or Nrrd) but I start to get a series of errors saying basically “3D array expected”. When I do that directly on slicer it works well.

I’m using a python script, and I am importing PyRadiomics, but no success so far.
I’ve been adding “force2D”, “force2Dextraction”, and “force2Ddomension”, but none gave positive results.
Does anyone have extracted 2D radiomic features using Python Pyradiomics package or have any guess on how to solve it all?

Thanks!

14 posts - 5 participants