SlicerCAT error with hdf5

fbordignon
Fri, 13 May 2022 12:59:20 +0000
Development

Hello everyone
I am having an issue with my custom app on linux that I am not sure if it is something related with my modifications or SlicerCAT in general.

Can someone test the following on a custom app on linux with python 3.9, please?

Slicer(custom app) console:

pip_install("h5py")
pip_install("netcdf4")
import h5py
import netCDF4

it is crashing upon import on libhdf5.so which both packages carry as dependencies. On Slicer 5.1 this is fine and properly handled, i.e. both packages install and load ok. I don’t even know how to handle it. One thing that comes to mind is building both packages with the same libhdf5, but if it is something wrong with the build I want to try and fix it. Thanks

22 posts - 5 participants