Use a centerline model and a segmentation to extract vessels from an image set

kantzoul
Mon, 26 Nov 2018 23:19:18 +0000
Support

Hi all,

So I have been trying to extract the vessels from a partial MRA brain scan. I wanted to try using the centerline model I got from the VMTK extension and a manual segmentation I did to isolate the vessels. Using the vesselness filtering in VMTK I manages to identify the max and min voxel sizes of the vessels. However I’m guessing I would need to make a script for this, but as I am not that familiar with python, I was wondering if anybody had any ideas or suggestions as to how to go about this?

Kind regards,

Kyprianos

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