New Extension: SlicerFreeSurfer

Support
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We have added a new extension called SlicerFreeSurfer to the latest Slicer preview releases (4.11).
This exension takes over handling FreeSurfer models/scalar overlay import from the 3D Slicer core, and adds support for importing FreeSurfer segmentations

FreeSurfer files can be dragged + dropped into Slicer, or users can use the FreeSurfer Importer module can to navigate and import many files from a FreeSurfer subject directory. Models imported from FreeSurfer can now also be transformed into the correct coordinate system by aligning them to a corresponding reference image.

Future plans include:

Any comments, feedback, suggestions are welcome.

Development was funded in part by NIH grant R01MH112748 and CANARIE’s Research Software Program.

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Hi Kyle,

Can you point me in the direction on information on how to add this SlicerFreeSurfer extension to 3DSlicer? I am new to 3dSlicer use and am not sure how to do this. I have added other extensions for other software to 3DSlicer through Slicer>edit/Applications & Settings/ Modules/ >add module. However this doesn’t seem to work for the SlicerFreeSurfer extension files I downloaded from Github.

My main issue to getting lh.pial and lh.white files created in FreeSurfer into 3dSlicer. Drag and drop just gives ‘unable to load’ error messages. So, any advice on this would also be great. I’m hoping that the SlicerFreeSurfer extension will help with this.

Thank in advance!

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Why are you trying to manually install it?

Go to View->Extension Manager (or CTRL/CMD + 4), click Install Extension tab, type SlicerFreeSurfer in the search box (or scroll down the list of all available extensions), then click Install and restart slicer for changes to take effect?

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Thanks,

I wasn’t aware SlicerFreeSurfer was able to be installed in that way. It seems to work fine and I am able to drag and drop pial and white matter files into Slicer.
Much appreicated .

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