Do you want to run these tests in 3D Slicer and are you in for a complicated procedure?
Here you go:
To run the new test tasks from the extension, you must “git install” the latest TotalSegmentator tool in the 3D Slicer directory.
In 3D Slicers Python console run
slicer.util.pip_uninstall("TotalSegmentator")
slicer.util.pip_install("git+https://github.com/wasserth/TotalSegmentator.git")
Then, find your 3D Slicer Python script directory.
On my Windows system, this is:
C:\Users\Yourname\AppData\Local\NA-MIC\Slicer 5.2.2\lib\Python\Scripts
Open a PowerShell in this directory.
Copy your weights into this directory.
In order to update the TotalSegmentator weights (here: aortic branches, they are licensed and may not be shared), execute
python ./totalseg_import_weights -i ./Task435_Heart_vessels_118subj.zip
The next problem is that the TotelSegmentator 3D Slicer extension does not know yet about the newly installed tasks.
See the next post. @lassoan and I will find a way to integrate new test tasks as well as implement a way to add new or licensed weights in the extension. Until then, you can use my workaround.