Hello,
Could anyone recommend an extension to autocontour the prostate on either MRI or CT scan?
Thanks
Hello,
Could anyone recommend an extension to autocontour the prostate on either MRI or CT scan?
Thanks
Hi,
Following up on Sarah’s question, I wanted to highlight the current state of automatic prostate delineation/segmentation of the prostate in slicer3d.
So far as my knowledge goes, there is not any active extension that proposes this. However, publicly available AI-based prostate segmentation tools already exist outside of Slicer.
Potential AI-based pre-trained models candidates could be the official nnUNet-based prostate segmentation model, trained on PROMISE12 (Task024_Promise), or newer models, also based on nnUNet framework, such as the BAMF prostate segmentation tool, or also MONAI-based (prostate158).
These tools mentioned above were trained on T2W MRI images.
There is also an active effort to integrate dockerized AI-based pre-trained models inside of Slicer, such as the SlicerMRunner extension, from the Medical Hub (mhub) initiative.