Hi,
I used to use crop volume as a procedure to avoid having to resample volumes after I manually aligned them. It involved steps of manually creating a transformation, creating a new ROI that encompasses the full volume in its new orientation, and running the crop volume with interpolated cropping.
This is no longer functioning for me. Instead, when I open the resultant crop volume in, say in Fiji, I can the image data in the same orientation as the original volume. (Slicer build r25771, on linux)
Is there a way to get the old behavior back?