Calculate perimeter and area of Head CT from DICOM

You can write a fully automatic script to do this analysis (segment the skull outer surface, find the slice with largest diameter or cross-sectional area, extract the cut the segmentation with the selected slice, and compute length and area for the contour). However, if you are new to Slicer’s Python API then implement this fully automatic method could take several days.

Since manually placement of a closed contour markup takes about 1 minute, most probably you could complete your entire analysis in a few hours - considerably faster than implementing the fully automatic solution. But if you are interested in investing into developing a fully automatic solution anyway then let us know, we are happy to help to get you started and give advice along the way.

Note that currently surface area of a closed contour is not displayed in the GUI but you need to copy-paste this script into the Python console to see it: How can I calculate an area on a CT image. I can calculate volumes (mm^3) but not areas (mm^2) (probably surface are display will be available in Markups module’s user interface within a few months).